AC093702.1 (novel transcript) - Rat Genome Database

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Gene: AC093702.1 (novel transcript) Homo sapiens
Analyze
Symbol: AC093702.1
Name: novel transcript
RGD ID: 16554958
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl245,013,214 - 45,013,668 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:230
Count of miRNA genes:223
Interacting mature miRNAs:229
Transcripts:ENST00000423433
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 3 2 2 2 4 1 2 11 3
Low 309 1046 449 96 37 17 2164 665 849 76 660 281 81 951 1482
Below cutoff 976 858 441 98 162 25 1494 1024 1017 117 409 559 74 221 986 1

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000423433
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl245,013,214 - 45,013,668 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC093702.1 COSMIC
Ensembl Genes ENSG00000231156 Ensembl
GTEx ENSG00000231156 GTEx
Human Proteome Map AC093702.1 Human Proteome Map