AL035409.1 (novel transcript) - Rat Genome Database

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Gene: AL035409.1 (novel transcript) Homo sapiens
Analyze
Symbol: AL035409.1
Name: novel transcript
RGD ID: 16554740
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl177,067,920 - 77,086,402 (+)EnsemblGRCh38hg38GRCh38
GRCh38.p14 Ensembl177,081,984 - 77,086,402 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:176
Count of miRNA genes:171
Interacting mature miRNAs:174
Transcripts:ENST00000454305
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1 6 2 27 4
Low 554 462 348 25 97 21 788 151 1292 48 247 609 9 7 599
Below cutoff 1254 949 395 164 247 55 1239 696 1437 114 679 345 113 297 826 1

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000454305
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl177,067,920 - 77,078,482 (+)Ensembl
RefSeq Acc Id: ENST00000659520
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl177,081,984 - 77,086,402 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AL035409.1 COSMIC
Ensembl Genes ENSG00000230498 Ensembl
GTEx ENSG00000230498 GTEx
Human Proteome Map AL035409.1 Human Proteome Map