AL021396.1 (novel transcript, antisense to TMX4) - Rat Genome Database

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Gene: AL021396.1 (novel transcript, antisense to TMX4) Homo sapiens
Analyze
Symbol: AL021396.1
Name: novel transcript, antisense to TMX4
RGD ID: 16554517
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl208,019,180 - 8,043,512 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:198
Count of miRNA genes:182
Interacting mature miRNAs:185
Transcripts:ENST00000457707, ENST00000607924, ENST00000608601
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage pharyngeal arch
High
Medium 1 299 1
Low 3 2 156 86 15 13 389 1 96 27 13
Below cutoff 1493 1558 878 214 1009 119 2321 1312 3116 130 688 906 98 1 678 1600 1

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000457707
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl208,019,873 - 8,027,956 (+)Ensembl
RefSeq Acc Id: ENST00000607924
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl208,019,223 - 8,027,725 (+)Ensembl
RefSeq Acc Id: ENST00000608601
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl208,022,626 - 8,043,512 (+)Ensembl
RefSeq Acc Id: ENST00000655912
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl208,019,385 - 8,028,030 (+)Ensembl
RefSeq Acc Id: ENST00000671251
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl208,019,180 - 8,029,045 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AL021396.1 COSMIC
Ensembl Genes ENSG00000229766 Ensembl
GTEx ENSG00000229766 GTEx
Human Proteome Map AL021396.1 Human Proteome Map