AL008627.1 (ribosomal protein L29 (RPL29) pseudogene) - Rat Genome Database

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Gene: AL008627.1 (ribosomal protein L29 (RPL29) pseudogene) Homo sapiens
Analyze
Symbol: AL008627.1
Name: ribosomal protein L29 (RPL29) pseudogene
RGD ID: 16554493
Description:
Type: processed_pseudogene
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl620,042,455 - 20,042,940 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:281
Count of miRNA genes:264
Interacting mature miRNAs:280
Transcripts:ENST00000446953
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1 13
Low 1104 651 423 90 691 41 1613 320 689 85 588 685 51 372 1098
Below cutoff 1093 1771 888 307 774 215 1891 1173 1160 209 512 684 98 679 1102 2

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000446953
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl620,042,455 - 20,042,940 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AL008627.1 COSMIC
Ensembl Genes ENSG00000229700 Ensembl
GTEx ENSG00000229700 GTEx
Human Proteome Map AL008627.1 Human Proteome Map