AL359837.1 (small EDRK-rich factor 2 (SERF2) pseudogene) - Rat Genome Database

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Gene: AL359837.1 (small EDRK-rich factor 2 (SERF2) pseudogene) Homo sapiens
Analyze
Symbol: AL359837.1
Name: small EDRK-rich factor 2 (SERF2) pseudogene
RGD ID: 16554476
Description:
Type: processed_pseudogene
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl1203,353,365 - 203,353,651 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:185
Count of miRNA genes:177
Interacting mature miRNAs:185
Transcripts:ENST00000381357
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium 3 2 2 1 1
Low 17 20 95 54 15 54 57 1 16 112 47 124 4 17
Below cutoff 189 326 147 25 118 18 425 191 277 48 116 161 8 122 303

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000381357
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1203,353,365 - 203,353,651 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AL359837.1 COSMIC
Ensembl Genes ENSG00000229652 Ensembl
GTEx ENSG00000229652 GTEx
Human Proteome Map AL359837.1 Human Proteome Map