AL139156.2 (pseudogene similar to part of alcohol dehydrogenase 5 (class III), chi polypeptidem (ADH5)) - Rat Genome Database

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Gene: AL139156.2 (pseudogene similar to part of alcohol dehydrogenase 5 (class III), chi polypeptidem (ADH5)) Homo sapiens
Analyze
Symbol: AL139156.2
Name: pseudogene similar to part of alcohol dehydrogenase 5 (class III), chi polypeptidem (ADH5)
RGD ID: 16554097
Description:
Type: processed_pseudogene
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl152,160,261 - 52,160,600 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:187
Count of miRNA genes:182
Interacting mature miRNAs:187
Transcripts:ENST00000414059
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 4 1 3 25 4 3 18 1 8
Low 1677 1331 1089 270 653 159 3624 1332 1225 248 1182 1186 118 1024 2227 2
Below cutoff 606 1128 499 265 617 219 587 682 1772 123 177 286 47 163 482 1

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000414059
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl152,160,261 - 52,160,600 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AL139156.2 COSMIC
Ensembl Genes ENSG00000228407 Ensembl
GTEx ENSG00000228407 GTEx
Human Proteome Map AL139156.2 Human Proteome Map