AC012358.3 (pseudogene similar to RIKEN cDNA 2210021J22) - Rat Genome Database

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Gene: AC012358.3 (pseudogene similar to RIKEN cDNA 2210021J22) Homo sapiens
Analyze
Symbol: AC012358.3
Name: pseudogene similar to RIKEN cDNA 2210021J22
RGD ID: 16553901
Description:
Type: processed_pseudogene
Previously known as: AC012358.2
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl255,224,280 - 55,225,908 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:231
Count of miRNA genes:220
Interacting mature miRNAs:230
Transcripts:ENST00000430010
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1 2 25 3
Low 2368 2115 1513 426 1376 264 3989 1592 3475 384 1395 1556 170 1143 2465 3
Below cutoff 55 848 205 192 508 196 360 594 211 29 24 40 60 323

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000430010
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl255,224,280 - 55,225,908 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC012358.3 COSMIC
Ensembl Genes ENSG00000227799 Ensembl
GTEx ENSG00000227799 GTEx
Human Proteome Map AC012358.3 Human Proteome Map


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-02-07 AC012358.3  pseudogene similar to RIKEN cDNA 2210021J22  AC012358.2  pseudogene similar to RIKEN cDNA 2210021J22  Symbol and/or name change 19259462 PROVISIONAL