AL136528.1 (novel transcript) - Rat Genome Database

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Gene: AL136528.1 (novel transcript) Homo sapiens
Analyze
Symbol: AL136528.1
Name: novel transcript
RGD ID: 16553840
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl13,658,938 - 3,668,772 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:101
Count of miRNA genes:61
Interacting mature miRNAs:63
Transcripts:ENST00000443034
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 45 1 2 35
Low 34 16 291 50 557 50 9 6 280 42 46 70 1 3 1
Below cutoff 459 668 401 215 763 188 668 235 708 150 489 486 34 167 380 2

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000443034
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl13,658,938 - 3,668,772 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AL136528.1 COSMIC
Ensembl Genes ENSG00000227589 Ensembl
GTEx ENSG00000227589 GTEx
Human Proteome Map AL136528.1 Human Proteome Map