AC092170.1 (pseudogene similar to part of golgi autoantigen, golgin subfamily a, 4 GOLGA4) - Rat Genome Database

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Gene: AC092170.1 (pseudogene similar to part of golgi autoantigen, golgin subfamily a, 4 GOLGA4) Homo sapiens
Analyze
Symbol: AC092170.1
Name: pseudogene similar to part of golgi autoantigen, golgin subfamily a, 4 GOLGA4
RGD ID: 16553751
Description:
Type: processed_pseudogene
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl2117,180,892 - 117,181,562 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:129
Count of miRNA genes:128
Interacting mature miRNAs:128
Transcripts:ENST00000440211
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 3 2 2 10 2 1 5 4 1 20 6
Below cutoff 46 25 34 14 51 12 48 29 56 17 63 47 5 9 18 2

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000440211
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2117,180,892 - 117,181,562 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC092170.1 COSMIC
Ensembl Genes ENSG00000227291 Ensembl
GTEx ENSG00000227291 GTEx
Human Proteome Map AC092170.1 Human Proteome Map