AC011290.1 (novel transcript, antisense to POU6F2) - Rat Genome Database

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Gene: AC011290.1 (novel transcript, antisense to POU6F2) Homo sapiens
Analyze
Symbol: AC011290.1
Name: novel transcript, antisense to POU6F2
RGD ID: 16553713
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl739,545,646 - 39,566,239 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:113
Count of miRNA genes:112
Interacting mature miRNAs:113
Transcripts:ENST00000439751
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 47 5 47 12 176 13 117 21 132 40 476 109 1 8 20 1
Below cutoff 545 517 612 182 293 138 1263 575 2079 176 307 463 51 415 789 1

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000439751
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl739,545,646 - 39,566,239 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC011290.1 COSMIC
Ensembl Genes ENSG00000227172 Ensembl
GTEx ENSG00000227172 GTEx
Human Proteome Map AC011290.1 Human Proteome Map