AC073621.1 (ligand of numb-protein X 1, E3 ubiquitin protein ligase pseudogene) - Rat Genome Database

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Gene: AC073621.1 (ligand of numb-protein X 1, E3 ubiquitin protein ligase pseudogene) Homo sapiens
Analyze
Symbol: AC073621.1
Name: ligand of numb-protein X 1, E3 ubiquitin protein ligase pseudogene
RGD ID: 16553707
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: AC073621.2
Related Functional Gene: LNX1  
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381717,422,677 - 17,423,729 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1717,422,681 - 17,423,704 (+)EnsemblGRCh38hg38GRCh38
GRCh371717,325,991 - 17,327,043 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map17p11.2NCBI
HuRef1717,078,244 - 17,079,296 (+)NCBIHuRef
CHM1_11717,334,702 - 17,335,754 (+)NCBICHM1_1
T2T-CHM13v2.01717,367,765 - 17,368,817 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:175
Count of miRNA genes:162
Interacting mature miRNAs:164
Transcripts:ENST00000381380
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 2 3
Low 16 39 203 47 126 9 757 33 59 26 15 216 40 690 213
Below cutoff 832 1140 939 351 383 245 2439 1181 2056 142 495 910 107 488 1741 2

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000381380
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1717,422,681 - 17,423,704 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC073621.1 COSMIC
Ensembl Genes ENSG00000227158 Ensembl, ENTREZGENE
GTEx ENSG00000227158 GTEx
Human Proteome Map AC073621.1 Human Proteome Map
NCBI Gene LOC644909 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-12-03 AC073621.1  ligand of numb-protein X 1, E3 ubiquitin protein ligase pseudogene  AC073621.2  ligand of numb-protein X 1, E3 ubiquitin protein ligase pseudogene  Symbol and/or name change 19259462 PROVISIONAL
2020-02-07 AC073621.2  ligand of numb-protein X 1, E3 ubiquitin protein ligase pseudogene  AC073621.1  ligand of numb-protein X 1, E3 ubiquitin protein ligase pseudogene  Symbol and/or name change 19259462 PROVISIONAL