AL121899.1 (novel transcript) - Rat Genome Database

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Gene: AL121899.1 (novel transcript) Homo sapiens
Analyze
Symbol: AL121899.1
Name: novel transcript
RGD ID: 16553540
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl202,207,217 - 2,213,151 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:560
Count of miRNA genes:341
Interacting mature miRNAs:367
Transcripts:ENST00000411839, ENST00000447956, ENST00000580351
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 10 19 8 7 4 24 4 220 46 1
Low 190 142 1225 311 619 249 896 45 2077 196 684 1087 70 35 379
Below cutoff 1019 996 428 267 685 183 1331 460 1080 145 309 323 86 580 751 1

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000411839
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl202,207,227 - 2,213,151 (+)Ensembl
RefSeq Acc Id: ENST00000447956
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl202,207,217 - 2,213,151 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AL121899.1 COSMIC
Ensembl Genes ENSG00000226644 Ensembl
GTEx ENSG00000226644 GTEx
Human Proteome Map AL121899.1 Human Proteome Map