AL592429.2 (novel transcript) - Rat Genome Database

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Gene: AL592429.2 (novel transcript) Homo sapiens
Analyze
Symbol: AL592429.2
Name: novel transcript
RGD ID: 16553520
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl6139,271,362 - 139,667,284 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:310
Count of miRNA genes:151
Interacting mature miRNAs:154
Transcripts:ENST00000440518, ENST00000441249
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage pharyngeal arch
High
Medium 9 2 196
Low 372 392 63 17 594 6 266 198 112 27 382 111 11 113 192 1
Below cutoff 1380 1775 749 282 810 178 2431 1533 1429 186 616 728 110 1 705 1667

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000440518
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl6139,283,107 - 139,287,307 (+)Ensembl
RefSeq Acc Id: ENST00000441249
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl6139,271,362 - 139,287,307 (+)Ensembl
RefSeq Acc Id: ENST00000647815
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl6139,486,482 - 139,667,283 (+)Ensembl
RefSeq Acc Id: ENST00000647987
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl6139,486,412 - 139,507,598 (+)Ensembl
RefSeq Acc Id: ENST00000648888
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl6139,534,319 - 139,667,284 (+)Ensembl
RefSeq Acc Id: ENST00000650173
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl6139,271,362 - 139,507,598 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AL592429.2 COSMIC
Ensembl Genes ENSG00000226571 Ensembl
GTEx ENSG00000226571 GTEx
Human Proteome Map AL592429.2 Human Proteome Map