AC005682.1 (solute carrier family 40 (iron-regulated transporter), member 1 (SLC40A1) pseudogene) - Rat Genome Database

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Gene: AC005682.1 (solute carrier family 40 (iron-regulated transporter), member 1 (SLC40A1) pseudogene) Homo sapiens
Analyze
Symbol: AC005682.1
Name: solute carrier family 40 (iron-regulated transporter), member 1 (SLC40A1) pseudogene
RGD ID: 16553444
Description:
Type: unprocessed_pseudogene
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl722,863,874 - 22,881,350 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:122
Count of miRNA genes:118
Interacting mature miRNAs:122
Transcripts:ENST00000452069
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 7 6 1 28 11 8 4 16 5 1 8
Low 1913 1932 729 232 1150 114 4156 1824 759 181 1013 1292 126 1193 2714 1
Below cutoff 444 1020 968 375 715 333 178 346 2489 202 396 274 44 10 66 2

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000452069
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl722,863,874 - 22,881,350 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC005682.1 COSMIC
Ensembl Genes ENSG00000226329 Ensembl
GTEx ENSG00000226329 GTEx
Human Proteome Map AC005682.1 Human Proteome Map