AC135977.1 (solute carrier family 25, member 33 (SLC25A33) pseudogene) - Rat Genome Database

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Gene: AC135977.1 (solute carrier family 25, member 33 (SLC25A33) pseudogene) Homo sapiens
Analyze
Symbol: AC135977.1
Name: solute carrier family 25, member 33 (SLC25A33) pseudogene
RGD ID: 16553427
Description:
Type: processed_pseudogene
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl1149,433,480 - 49,434,438 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:157
Count of miRNA genes:82
Interacting mature miRNAs:85
Transcripts:ENST00000413181, ENST00000526165
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 16 21 20 42 20 25 4 13 8 363 43
Low 284 98 329 120 257 110 890 452 855 190 290 478 22 245 473 3
Below cutoff 1774 1957 1170 398 786 258 2811 1434 2624 163 594 917 140 882 1860 1

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000526165
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1149,433,480 - 49,434,438 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC135977.1 COSMIC
Ensembl Genes ENSG00000226268 Ensembl
GTEx ENSG00000226268 GTEx
Human Proteome Map AC135977.1 Human Proteome Map