AL121917.1 (novel transcript, antisense to GNAS) - Rat Genome Database

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Gene: AL121917.1 (novel transcript, antisense to GNAS) Homo sapiens
Analyze
Symbol: AL121917.1
Name: novel transcript, antisense to GNAS
RGD ID: 16553295
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl2058,863,528 - 58,888,809 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:412
Count of miRNA genes:321
Interacting mature miRNAs:334
Transcripts:ENST00000424434, ENST00000441270, ENST00000605534
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 1 1 1 3 24 1 1
Low 1161 568 1232 206 937 83 2219 491 1339 203 1269 1246 133 622 1241 5 1
Below cutoff 1240 2181 451 375 776 338 1975 1592 2332 193 151 333 40 1 580 1456

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000424434
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2058,881,750 - 58,888,809 (-)Ensembl
RefSeq Acc Id: ENST00000441270
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2058,863,528 - 58,888,792 (-)Ensembl
RefSeq Acc Id: ENST00000605534
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2058,884,405 - 58,884,981 (-)Ensembl
RefSeq Acc Id: ENST00000652204
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2058,881,198 - 58,885,004 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AL121917.1 COSMIC
Ensembl Genes ENSG00000225806 Ensembl
GTEx ENSG00000225806 GTEx
Human Proteome Map AL121917.1 Human Proteome Map