AL139008.1 (novel pseudogene) - Rat Genome Database

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Gene: AL139008.1 (novel pseudogene) Homo sapiens
Analyze
Symbol: AL139008.1
Name: novel pseudogene
RGD ID: 16553096
Description:
Type: processed_pseudogene
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl933,574,361 - 33,574,588 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:259
Count of miRNA genes:244
Interacting mature miRNAs:254
Transcripts:ENST00000437894
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 15 2 18 10 46 10 270 4 247 23 245 83 3 1 39
Below cutoff 60 47 111 25 46 18 495 34 498 52 289 128 10 15 272

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000437894
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl933,574,361 - 33,574,588 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AL139008.1 COSMIC
Ensembl Genes ENSG00000225123 Ensembl
GTEx ENSG00000225123 GTEx
Human Proteome Map AL139008.1 Human Proteome Map