AC016716.1 (novel transcript) - Rat Genome Database

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Gene: AC016716.1 (novel transcript) Homo sapiens
Analyze
Symbol: AC016716.1
Name: novel transcript
RGD ID: 16552982
Description:
Type: lncrna
Previously known as: AC016716.2
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl280,028,012 - 80,030,551 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:171
Count of miRNA genes:169
Interacting mature miRNAs:170
Transcripts:ENST00000418621
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium 1 1 5
Low 17 174 4 7 4 10 1 2531 6 396 5 1
Below cutoff 207 51 153 13 66 11 125 65 423 33 119 41 3 34 52

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000418621
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl280,028,012 - 80,030,551 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC016716.1 COSMIC
Ensembl Genes ENSG00000224731 Ensembl
GTEx ENSG00000224731 GTEx
Human Proteome Map AC016716.1 Human Proteome Map


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-04-30 AC016716.1  novel transcript  AC016716.2  novel transcript  Symbol and/or name change 19259462 PROVISIONAL