AL158825.1 (novel pseudogene) - Rat Genome Database

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Gene: AL158825.1 (novel pseudogene) Homo sapiens
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Symbol: AL158825.1
Name: novel pseudogene
RGD ID: 16552844
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: LOC100133316; required for meiotic nuclear division 1 homolog (S. cerevisiae) pseudogene
Related Functional Gene: RMND1  
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38974,935,054 - 74,935,694 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl974,935,176 - 74,935,696 (+)EnsemblGRCh38hg38GRCh38
GRCh37977,549,970 - 77,550,610 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map9q21.13NCBI
HuRef947,372,060 - 47,372,573 (+)NCBIHuRef
CHM1_1977,696,377 - 77,696,891 (+)NCBICHM1_1
T2T-CHM13v2.0987,087,961 - 87,088,601 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:195
Count of miRNA genes:185
Interacting mature miRNAs:194
Transcripts:ENST00000414735
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
12 43 28 28 94 27 48 2 9 68 9 39 157 122 1 64 37 120 34 4 1

Sequence


Ensembl Acc Id: ENST00000414735
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl974,935,176 - 74,935,696 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AL158825.1 COSMIC
Ensembl Genes ENSG00000224297 Ensembl, ENTREZGENE
GTEx ENSG00000224297 GTEx
Human Proteome Map AL158825.1 Human Proteome Map
NCBI Gene LOC100133316 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-06-25 AL158825.1  novel pseudogene  LOC100133316  required for meiotic nuclear division 1 homolog (S. cerevisiae) pseudogene  Symbol and/or name change 19259462 PROVISIONAL
2020-06-18 LOC100133316  required for meiotic nuclear division 1 homolog (S. cerevisiae) pseudogene  AL158825.1  novel pseudogene  Symbol and/or name change 5135510 APPROVED