AC108681.1 (novel transcript) - Rat Genome Database

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Gene: AC108681.1 (novel transcript) Homo sapiens
Analyze
Symbol: AC108681.1
Name: novel transcript
RGD ID: 16552774
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl3187,796,187 - 187,805,258 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:307
Count of miRNA genes:270
Interacting mature miRNAs:274
Transcripts:ENST00000417384, ENST00000433178
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 2 2
Low 40 30 15 15 59 15 23 4 2 9 83 155 2 12
Below cutoff 273 475 121 85 570 56 1000 216 254 69 360 296 31 122 600 2

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000417384
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3187,796,255 - 187,805,137 (+)Ensembl
RefSeq Acc Id: ENST00000433178
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3187,796,187 - 187,805,258 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC108681.1 COSMIC
Ensembl Genes ENSG00000224049 Ensembl
GTEx ENSG00000224049 GTEx
Human Proteome Map AC108681.1 Human Proteome Map