AL354714.2 (spermine synthase (SMS) pseudogene) - Rat Genome Database

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Gene: AL354714.2 (spermine synthase (SMS) pseudogene) Homo sapiens
Analyze
Symbol: AL354714.2
Name: spermine synthase (SMS) pseudogene
RGD ID: 16551967
Description:
Type: processed_pseudogene
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl1160,894,980 - 160,896,076 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:140
Count of miRNA genes:135
Interacting mature miRNAs:137
Transcripts:ENST00000425270
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component
High
Medium 35 12 19 9 44 10 120 4 46 76 81 120 1
Low 469 483 581 111 567 98 716 254 821 162 440 702 26 110 444 5
Below cutoff 1816 2257 940 335 1094 195 3276 1789 2756 133 844 765 140 1 1044 2186

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000425270
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1160,894,980 - 160,896,076 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AL354714.2 COSMIC
Ensembl Genes ENSG00000213080 Ensembl
GTEx ENSG00000213080 GTEx
Human Proteome Map AL354714.2 Human Proteome Map