U3 (Small nucleolar RNA U3) - Rat Genome Database

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Gene: U3 (Small nucleolar RNA U3) Homo sapiens
Analyze
Symbol: U3
Name: Small nucleolar RNA U3
RGD ID: 16551908
Description:
Type: snorna
RefSeq Status: MODEL
Previously known as: AC018563.1
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381536,852,640 - 36,852,859 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1536,852,640 - 36,852,859 (+)EnsemblGRCh38hg38GRCh38
Cytogenetic Map15q14NCBI
T2T-CHM13v2.01534,658,114 - 34,658,333 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:24
Count of miRNA genes:23
Interacting mature miRNAs:23
Transcripts:ENST00000391209
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 6 6 8 4 4 3 7 3 26 16 28 4 1 4
Below cutoff 80 52 33 13 16 5 49 59 201 12 96 21 8 16 34

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000391209
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1536,852,640 - 36,852,859 (+)Ensembl
RefSeq Acc Id: XR_007064822
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381536,852,640 - 36,852,859 (+)NCBI
RefSeq Acc Id: XR_007086006
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01534,658,114 - 34,658,333 (+)NCBI

Additional Information

Database Acc Id Source(s)
COSMIC U3 COSMIC
Ensembl Genes ENSG00000212511 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000391209 ENTREZGENE
GTEx ENSG00000212511 GTEx
Human Proteome Map U3 Human Proteome Map
NCBI Gene LOC124903595 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-08-20 U3  Small nucleolar RNA U3  AC018563.1    Symbol and/or name change 19259462 PROVISIONAL
2020-02-07 AC018563.1    U3  Small nucleolar RNA U3  Symbol and/or name change 19259462 PROVISIONAL