AC091057.1 (OTU deubiquitinase 7A pseudogene) - Rat Genome Database

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Gene: AC091057.1 (OTU deubiquitinase 7A pseudogene) Homo sapiens
Analyze
Symbol: AC091057.1
Name: OTU deubiquitinase 7A pseudogene
RGD ID: 16550918
Description: INVOLVED IN miRNA-mediated post-transcriptional gene silencing (inferred)
Type: pseudo (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: LOC100288637
Related Functional Gene: OTUD7A  
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381530,646,115 - 30,773,009 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1530,658,717 - 30,772,993 (+)EnsemblGRCh38hg38GRCh38
GRCh371530,938,318 - 31,065,212 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map15q13.2NCBI
HuRef158,115,880 - 8,243,031 (+)NCBIHuRef
CHM1_11530,928,943 - 31,056,033 (+)NCBICHM1_1
T2T-CHM13v2.01528,439,903 - 28,566,993 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

References
Additional References at PubMed
PMID:12477932   PMID:14702039   PMID:26760575  


Genomics

Variants

.
Variants in AC091057.1
2 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
1204 2432 2788 2245 4942 1717 2339 4 616 1948 458 2268 7271 6453 52 3708 844 1731 1612 170

Sequence


Ensembl Acc Id: ENST00000562954
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1530,658,740 - 30,768,126 (+)Ensembl
Ensembl Acc Id: ENST00000602616
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1530,658,717 - 30,772,993 (+)Ensembl
RefSeq Acc Id: NR_038253
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381530,646,115 - 30,773,009 (+)NCBI
T2T-CHM13v2.01528,439,903 - 28,566,993 (+)NCBI
Sequence:
RefSeq Acc Id: NR_038254
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381530,658,717 - 30,773,009 (+)NCBI
T2T-CHM13v2.01528,452,519 - 28,566,993 (+)NCBI
Sequence:
RefSeq Acc Id: NR_038255
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381530,658,717 - 30,773,009 (+)NCBI
T2T-CHM13v2.01528,452,519 - 28,566,993 (+)NCBI
Sequence:
Protein Sequences
GenBank Protein AAI12922 (Get FASTA)   NCBI Sequence Viewer  
  EAW61250 (Get FASTA)   NCBI Sequence Viewer  


Additional Information

Database Acc Id Source(s)
COSMIC AC091057.1 COSMIC
Ensembl Genes ENSG00000187951 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000602616 ENTREZGENE
GTEx ENSG00000187951 GTEx
Human Proteome Map AC091057.1 Human Proteome Map
NCBI Gene LOC100288637 ENTREZGENE
RNAcentral URS0000D6DD3C RNACentral
  URS0000D6E747 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-08-20 AC091057.1  OTU deubiquitinase 7A pseudogene  AC091057.1  novel transcript  Symbol and/or name change 19259462 PROVISIONAL
2020-06-25 AC091057.1  novel transcript  LOC100288637  OTU deubiquitinase 7A pseudogene  Symbol and/or name change 19259462 PROVISIONAL
2020-06-18 LOC100288637  OTU deubiquitinase 7A pseudogene  AC091057.1  novel transcript  Symbol and/or name change 5135510 APPROVED