AC131971.1 (novel transcript, antisense to NAP1L4) - Rat Genome Database

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Gene: AC131971.1 (novel transcript, antisense to NAP1L4) Homo sapiens
Analyze
Symbol: AC131971.1
Name: novel transcript, antisense to NAP1L4
RGD ID: 16550889
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl112,989,863 - 2,991,344 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:245
Count of miRNA genes:238
Interacting mature miRNAs:245
Transcripts:ENST00000332881
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1 1
Low 550 180 454 146 858 54 1394 392 943 75 482 614 101 83 842 2
Below cutoff 1722 2406 1123 379 880 310 2663 1651 2571 270 864 868 68 1030 1757

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000332881
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl112,989,863 - 2,991,344 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC131971.1 COSMIC
Ensembl Genes ENSG00000183562 Ensembl
GTEx ENSG00000183562 GTEx
Human Proteome Map AC131971.1 Human Proteome Map