AC007601.1 (novel transcript, antisense to SNX29) - Rat Genome Database

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Gene: AC007601.1 (novel transcript, antisense to SNX29) Homo sapiens
Analyze
Symbol: AC007601.1
Name: novel transcript, antisense to SNX29
RGD ID: 16550824
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl1612,086,746 - 12,090,302 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:487
Count of miRNA genes:367
Interacting mature miRNAs:388
Transcripts:ENST00000312019
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 10 3 7 103 29 1 14 24 298 13 8 16
Below cutoff 1113 1286 916 194 1145 115 2288 792 2053 275 729 1058 88 654 1264 3

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000312019
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1612,086,746 - 12,090,302 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC007601.1 COSMIC
Ensembl Genes ENSG00000175604 Ensembl
GTEx ENSG00000175604 GTEx
Human Proteome Map AC007601.1 Human Proteome Map