Symbol:
LOC128926016 (Ensembl: Gm56837)
Name:
STARR-positive B cell enhancer ABC_E2879 (Ensembl:predicted gene, 56837)
RGD ID:
163682530
Description:
This genomic region was identified as a putative B cell regulatory element by FAIRE-seq (formaldehyde-assisted isolation of regulatory elements sequencing), and was validated as an enhancer by STARR-seq (self-transcribing active regulatory region sequencing) in lipopolysaccharide-activated mouse splenic B cells. A subregion was identified as a candidate cis-regulatory module (CRM) in developing mouse thymocytes based on a combination of DNase I hypersensitivity and transcription factor binding. That CRM was validated as an active enhancer by high-throughput CapStarr-seq reporter assays showing weak activity in P5424 T cells. [provided by RefSeq, Oct 2023]
Type:
biological-region (Ensembl: lncRNA)
RefSeq Status:
REVIEWED
Previously known as:
CapStarr-seq enhancer MGSCv37_chr8:121947692-121947957; Rr368636
Latest Assembly:
GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 8 120,150,500 - 120,150,801 (+) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 8 120,145,702 - 120,152,108 (+) Ensembl GRCm39 Ensembl
JBrowse:
View Region in Genome Browser (JBrowse)
Model
.
1357494 Obsty2_m obesity 2 (mouse) Not determined 8 96245241 129745061 Mouse 4141435 Fbtq3_m femoral bone trait QTL 3 (mouse) Not determined 8 100965309 130127694 Mouse 12904960 Gmmq6_m gastrocnemius muscle mass QTL 6 (mouse) 8 111481497 130127694 Mouse 11252141 Fdr2_m fat response to dietary restriction 2 (mouse) 8 98390634 130127694 Mouse 10045619 Heal14_m wound healing/regeneration 14 (mouse) Not determined 8 86443553 120443701 Mouse 1302105 Im1_m Immunoregulatory 1 (mouse) Not determined 8 99828531 130127694 Mouse 12880431 Fgf23lq2_m FGF23 serum level QTL 2 (mouse) 8 97626632 130127694 Mouse 1301080 Sluc9_m susceptibility to lung cancer 9 (mouse) Not determined 8 99828531 130127694 Mouse 10412274 Leci1_m leukocyte endothelial cell interactions 1 (mouse) Not determined 8 110415083 130127694 Mouse 12904938 Edlmmq7_m extensor digitorum longus muscle mass QTL 7 (mouse) 8 111481497 130127694 Mouse 10412273 Fcd1_m functional capillary density 1 (mouse) Not determined 8 110415083 130127694 Mouse 1302049 Heal1_m wound healing/regeneration 1 (mouse) Not determined 8 86443553 120443701 Mouse 27226796 Scvln16_m sacral vertebrae length 2, 16 week (mouse) 8 89726628 130027694 Mouse 14746994 Manh65_m mandible shape 65 (mouse) 8 106489629 130127694 Mouse 27095912 Pglq14_m pelvic girdle length QTL 14, 16 week (mouse) 8 74126628 126826739 Mouse 4141546 Mrdq3_m modifier of retinal degeneration QTL 3 (mouse) Not determined 114439420 126055880 Mouse 1301253 Skmw2_m skeletal muscle weight 2 (mouse) Not determined 8 86443553 120443701 Mouse 1301316 Dntcs1_m dental caries susceptibility 1 (mouse) Not determined 8 103443553 127781786 Mouse 1357708 Orq1_m ovulation rate QTL 1 (mouse) Not determined 8 71740461 124622354 Mouse 4142023 W3q5_m weight 3 weeks QTL 5 (mouse) Not determined 71740461 124622354 Mouse 1301481 Lith11_m lithogenic gene 11 (mouse) Not determined 8 98563635 130127694 Mouse 11532692 Sluc38a_m susceptibility to lung cancer 38a (mouse) 8 105033977 130127694 Mouse 11532691 Sluc38_m susceptibility to lung cancer 38 (mouse) 8 105033977 130127694 Mouse
Click on a value in the shaded box below the category label to view a detailed expression data table for that system.
Ensembl Acc Id:
ENSMUST00000245177
Type:
CODING
Position:
Mouse Assembly Chr Position (strand) Source GRCm39 Ensembl 8 120,145,705 - 120,151,167 (+) Ensembl
Ensembl Acc Id:
ENSMUST00000323519
Type:
CODING
Position:
Mouse Assembly Chr Position (strand) Source GRCm39 Ensembl 8 120,145,710 - 120,151,147 (+) Ensembl
Ensembl Acc Id:
ENSMUST00000323521
Type:
CODING
Position:
Mouse Assembly Chr Position (strand) Source GRCm39 Ensembl 8 120,145,710 - 120,151,143 (+) Ensembl
Ensembl Acc Id:
ENSMUST00000323523
Type:
CODING
Position:
Mouse Assembly Chr Position (strand) Source GRCm39 Ensembl 8 120,145,711 - 120,151,141 (+) Ensembl
Ensembl Acc Id:
ENSMUST00000323525
Type:
CODING
Position:
Mouse Assembly Chr Position (strand) Source GRCm39 Ensembl 8 120,145,702 - 120,148,845 (+) Ensembl
Ensembl Acc Id:
ENSMUST00000323527
Type:
CODING
Position:
Mouse Assembly Chr Position (strand) Source GRCm39 Ensembl 8 120,148,093 - 120,151,141 (+) Ensembl
Ensembl Acc Id:
ENSMUST00000323531
Type:
CODING
Position:
Mouse Assembly Chr Position (strand) Source GRCm39 Ensembl 8 120,150,636 - 120,152,108 (+) Ensembl
Date
Current Symbol
Current Name
Previous Symbol
Previous Name
Description
Reference
Status
2023-10-10
LOC128926016
STARR-positive B cell enhancer ABC_E2879
LOC128926016
CapStarr-seq enhancer MGSCv37_chr8:121947692-121947957
Symbol and/or name change
5135510 APPROVED
