Pwwp4a (PWWP domain containing 4A) - Rat Genome Database

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Gene: Pwwp4a (PWWP domain containing 4A) Mus musculus
Analyze
Symbol: Pwwp4a
Name: PWWP domain containing 4A
RGD ID: 1625471
MGI Page MGI
Description: Orthologous to human PWWP4 (PWWP domain containing 4).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Gm14685; hypothetical protein LOC574404; MGC106740; uncharacterized protein LOC574404
RGD Orthologs
Human
Rat
Dog
Pig
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X72,160,636 - 72,172,875 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX72,160,653 - 72,172,868 (+)EnsemblGRCm39 Ensembl
GRCm38X73,117,030 - 73,129,269 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX73,117,047 - 73,129,262 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X70,368,407 - 70,374,599 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X69,375,836 - 69,381,980 (+)NCBIMGSCv36mm8
Cytogenetic MapXA7.3NCBI
cM MapX37.29NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:16141072   PMID:16141073  


Genomics

Comparative Map Data
Pwwp4a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X72,160,636 - 72,172,875 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX72,160,653 - 72,172,868 (+)EnsemblGRCm39 Ensembl
GRCm38X73,117,030 - 73,129,269 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX73,117,047 - 73,129,262 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X70,368,407 - 70,374,599 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X69,375,836 - 69,381,980 (+)NCBIMGSCv36mm8
Cytogenetic MapXA7.3NCBI
cM MapX37.29NCBI
PWWP4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X153,266,147 - 153,279,145 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX153,266,152 - 153,279,145 (+)EnsemblGRCh38hg38GRCh38
GRCh37X152,531,608 - 152,544,602 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic MapXq28NCBI
HuRefX141,196,714 - 141,202,964 (+)NCBIHuRef
CHM1_1X152,411,523 - 152,417,677 (+)NCBICHM1_1
T2T-CHM13v2.0X151,533,668 - 151,546,674 (+)NCBIT2T-CHM13v2.0
Pwwp4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X156,159,344 - 156,165,457 (+)NCBIGRCr8
mRatBN7.2X151,008,141 - 151,014,223 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX151,008,123 - 151,014,216 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01146,966,354 - 146,974,136 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1146,966,527 - 146,968,689 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl1147,080,783 - 147,082,945 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01153,261,509 - 153,267,599 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X159,184,315 - 159,186,653 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Cytogenetic MapXq37NCBI
LOC102152370
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X121,011,810 - 121,031,354 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX106,385,444 - 106,395,708 (-)NCBIDog10K_Boxer_Tasha
LOC110257816
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1X124,024,771 - 124,027,078 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1

Variants

.
Variants in Pwwp4a
123 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:349
Count of miRNA genes:175
Interacting mature miRNAs:179
Transcripts:ENSMUST00000088459, ENSMUST00000179117
Prediction methods:Miranda, Pita, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4141630Gct6_mgranulosa cell tumorigenesis 6 (mouse)Not determined47179121129764756Mouse
13464140Hdlq108_mHDL QTL 108 (mouse)X5777196091771960Mouse
1301009Pbwg7_mpostnatal body weight growth 7 (mouse)Not determinedX3911371473113814Mouse
4141565Pbwg21_mpostnatal body weight growth 21 (mouse)Not determinedX3911371473113814Mouse
25314311Syncl3_msynaptonemal complex length 3 (mouse)X5198887789743606Mouse
13824980Ferq1_mgenetic fertility QTL 1 (mouse)X54045360148782996Mouse
4142200Rtwq1_mreduced testis weight QTL 1 (mouse)Not determined4147706075477203Mouse
1300794Spha2_msperm head anomaly 2 (mouse)Not determinedX3992149886260137Mouse
12879918Shm4_msperm head morphology 4 (mouse)X72072050102062720Mouse
25314318Sccor2_msynaptonemal complex length to mean MLH1 count ratio 2 (mouse)X7054360696543606Mouse
1357433Dbts2_mdiabetes 2 (mouse)Not determinedX7226295150107038Mouse
1301278Bdln1_mbody length 1 (mouse)Not determinedX4170210675702218Mouse
1300702Fcsa4_mfemoral cross-sectional area 4 (mouse)Not determinedX4602744480027567Mouse
25314316Mlh1fc3_mMLH1 foci count 3 (mouse)X6134360689843606Mouse
10412108Desp5_mdespair 5 (mouse)Not determinedX5472235188722351Mouse
1357730Hstx1_mhybrid sterility, X chromosome 1 (mouse)Not determinedX7145385277600812Mouse
13208567Bmiq12_mbody mass index QTL 12 (mouse)X3526365377043606Mouse
4141665Mhysq2_mmale hybrid sterility QTL 2 (mouse)Not determined71453852139203212Mouse


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001025383 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006528181 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006528182 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006528183 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006528184 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006528185 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006528186 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006528187 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006528188 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006528189 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006528190 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036162052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AL136329 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC094343 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC147366 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC151162 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX813330 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000088459   ⟹   ENSMUSP00000085806
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX72,160,653 - 72,172,868 (+)Ensembl
GRCm38.p6 EnsemblX73,117,047 - 73,129,262 (+)Ensembl
Ensembl Acc Id: ENSMUST00000179117   ⟹   ENSMUSP00000137311
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX72,166,674 - 72,172,866 (+)Ensembl
GRCm38.p6 EnsemblX73,123,068 - 73,129,260 (+)Ensembl
RefSeq Acc Id: NM_001025383   ⟹   NP_001020554
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X72,166,674 - 72,172,866 (+)NCBI
GRCm38X73,123,068 - 73,129,260 (+)NCBI
MGSCv37X70,368,407 - 70,374,599 (+)RGD
cM MapX ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006528181   ⟹   XP_006528244
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X72,161,283 - 72,172,875 (+)NCBI
GRCm38X73,117,677 - 73,129,269 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006528182   ⟹   XP_006528245
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X72,160,639 - 72,172,875 (+)NCBI
GRCm38X73,117,032 - 73,129,269 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006528183   ⟹   XP_006528246
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X72,163,386 - 72,172,875 (+)NCBI
GRCm38X73,120,814 - 73,129,269 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006528184   ⟹   XP_006528247
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X72,163,386 - 72,172,875 (+)NCBI
GRCm38X73,120,814 - 73,129,269 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006528185   ⟹   XP_006528248
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X72,161,273 - 72,172,875 (+)NCBI
GRCm38X73,117,667 - 73,129,269 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006528186   ⟹   XP_006528249
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X72,160,657 - 72,172,875 (+)NCBI
GRCm38X73,117,051 - 73,129,269 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006528187   ⟹   XP_006528250
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X72,161,273 - 72,172,875 (+)NCBI
GRCm38X73,117,667 - 73,129,269 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006528188   ⟹   XP_006528251
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X72,160,636 - 72,172,875 (+)NCBI
GRCm38X73,117,030 - 73,129,269 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006528189   ⟹   XP_006528252
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X72,163,386 - 72,172,875 (+)NCBI
GRCm38X73,120,814 - 73,129,269 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006528190   ⟹   XP_006528253
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X72,163,386 - 72,172,875 (+)NCBI
GRCm38X73,123,153 - 73,129,269 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036162052   ⟹   XP_036017945
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X72,165,933 - 72,172,875 (+)NCBI
Sequence:
RefSeq Acc Id: NP_001020554   ⟸   NM_001025383
- UniProtKB: Q52KH6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006528245   ⟸   XM_006528182
- Peptide Label: isoform X1
- UniProtKB: Q52KH6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006528249   ⟸   XM_006528186
- Peptide Label: isoform X1
- UniProtKB: Q52KH6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006528251   ⟸   XM_006528188
- Peptide Label: isoform X1
- UniProtKB: Q52KH6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006528244   ⟸   XM_006528181
- Peptide Label: isoform X1
- UniProtKB: Q52KH6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006528248   ⟸   XM_006528185
- Peptide Label: isoform X1
- UniProtKB: Q52KH6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006528250   ⟸   XM_006528187
- Peptide Label: isoform X1
- UniProtKB: Q52KH6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006528247   ⟸   XM_006528184
- Peptide Label: isoform X1
- UniProtKB: Q52KH6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006528246   ⟸   XM_006528183
- Peptide Label: isoform X1
- UniProtKB: Q52KH6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006528252   ⟸   XM_006528189
- Peptide Label: isoform X1
- UniProtKB: Q52KH6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006528253   ⟸   XM_006528190
- Peptide Label: isoform X1
- UniProtKB: Q52KH6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000085806   ⟸   ENSMUST00000088459
Ensembl Acc Id: ENSMUSP00000137311   ⟸   ENSMUST00000179117
RefSeq Acc Id: XP_036017945   ⟸   XM_036162052
- Peptide Label: isoform X1
- UniProtKB: Q52KH6 (UniProtKB/TrEMBL)
Protein Domains
MUM1-like PWWP   PWWP

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q52KH6-F1-model_v2 AlphaFold Q52KH6 1-695 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3710618 AgrOrtholog
Ensembl Genes ENSMUSG00000067771 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSG00000071745 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000080324.4 UniProtKB/TrEMBL
  ENSMUST00000088459 ENTREZGENE
  ENSMUST00000088459.9 UniProtKB/TrEMBL
Gene3D-CATH 2.30.30.140 UniProtKB/TrEMBL
  6.10.300.20 UniProtKB/TrEMBL
InterPro MUM1-like UniProtKB/TrEMBL
  MUM1-like_PWWP UniProtKB/TrEMBL
  PWP3A_3B_4_C UniProtKB/TrEMBL
  PWP3A_3B_4_N UniProtKB/TrEMBL
KEGG Report mmu:574404 UniProtKB/TrEMBL
  mmu:574405 UniProtKB/TrEMBL
MGD MGI:3710618 ENTREZGENE
NCBI Gene 574404 ENTREZGENE
PANTHER PTHR31333 UniProtKB/TrEMBL
  PWWP DOMAIN-CONTAINING 4 UniProtKB/TrEMBL
Pfam MUM1-like_PWWP UniProtKB/TrEMBL
  PWP3A-B_C UniProtKB/TrEMBL
  PWP3A-B_N UniProtKB/TrEMBL
PhenoGen Pwwp4a PhenoGen
Superfamily-SCOP Tudor/PWWP/MBT UniProtKB/TrEMBL
UniProt Q52KH6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-08-24 Pwwp4a  PWWP domain containing 4A  Gm14685  predicted gene 14685  Symbol and/or name updated 27372883 PROVISIONAL
2011-07-27 Gm14685  predicted gene 14685  OTTMUSG00000017677  predicted gene, OTTMUSG00000017677  Symbol and/or name change 5135510 APPROVED