Samt1b (spermatogenesis associated multipass transmembrane protein 1b) - Rat Genome Database

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Gene: Samt1b (spermatogenesis associated multipass transmembrane protein 1b) Mus musculus
Analyze
No known orthologs.
Symbol: Samt1b
Name: spermatogenesis associated multipass transmembrane protein 1b
RGD ID: 1625172
MGI Page MGI
Description: Predicted to be involved in bicellular tight junction assembly and cell adhesion. Predicted to be active in bicellular tight junction and plasma membrane.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 4921511M17Rik; RIKEN cDNA 4921511M17 gene; uncharacterized protein LOC667256
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X152,805,776 - 152,816,826 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX152,805,776 - 152,815,447 (-)EnsemblGRCm39 Ensembl
GRCm38X154,022,780 - 154,033,827 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX154,022,780 - 154,033,827 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X150,457,326 - 150,466,994 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X149,342,306 - 149,353,356 (-)NCBIMGSCv36mm8
Cytogenetic MapXF3NCBI
cM MapX72.38NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073   PMID:21873635  


Genomics

Variants

.
Variants in Samt1b
276 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10401118Pgia39_mproteoglycan induced arthritis 39 (mouse)Not determinedX144474380169476592Mouse
1558900Bw3_mbody weight QTL 3 (mouse)Not determinedX133540040165298595Mouse
1302000Pgia25_mproteoglycan induced arthritis 2 (mouse)Not determinedX144474380169476592Mouse
13824981Svwq2_mseminal vesicle weight QTL 2 (mouse)X128900749153782996Mouse
12738421Lfibq17_mliver fibrosis QTL 17 (mouse)X148148453164945064Mouse
1301209Cia19_mcollagen induced arthritis 19 (mouse)Not determinedX120993165160213038Mouse
10412164Cmv2_mcytomegalovirus resistance 2 (mouse)Not determinedX125685149159685269Mouse
1357823Spha3_msperm head anomaly 3 (mouse)Not determinedX102055848162758941Mouse


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000177994   ⟹   ENSMUSP00000137533
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX152,805,776 - 152,816,823 (-)Ensembl
GRCm38.p6 EnsemblX154,022,780 - 154,033,827 (-)Ensembl
Ensembl Acc Id: ENSMUST00000179369   ⟹   ENSMUSP00000136221
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX152,805,776 - 152,815,447 (-)Ensembl
GRCm38.p6 EnsemblX154,022,780 - 154,032,451 (-)Ensembl
RefSeq Acc Id: NM_001201358   ⟹   NP_001188287
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X152,805,776 - 152,816,823 (-)NCBI
GRCm38X154,022,780 - 154,033,827 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017318606   ⟹   XP_017174095
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X152,805,778 - 152,816,826 (-)NCBI
GRCm38X154,022,782 - 154,032,531 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001188287 (Get FASTA)   NCBI Sequence Viewer  
  XP_017174095 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein BAB31785 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000116409.2
  ENSMUSP00000136221.2
  ENSMUSP00000137062.2
  ENSMUSP00000137495.2
  ENSMUSP00000137533
  ENSMUSP00000137533.2
RefSeq Acc Id: NP_001188287   ⟸   NM_001201358
- UniProtKB: A2BED8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017174095   ⟸   XM_017318606
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSMUSP00000137533   ⟸   ENSMUST00000177994
Ensembl Acc Id: ENSMUSP00000136221   ⟸   ENSMUST00000179369

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A2BED8-F1-model_v2 AlphaFold A2BED8 1-237 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1925342 AgrOrtholog
Ensembl Genes ENSMUSG00000094577 Ensembl, UniProtKB/TrEMBL
  ENSMUSG00000094802 UniProtKB/TrEMBL
  ENSMUSG00000096867 UniProtKB/TrEMBL
  ENSMUSG00000121587 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000144098.2 UniProtKB/TrEMBL
  ENSMUST00000177994 ENTREZGENE
  ENSMUST00000177994.8 UniProtKB/TrEMBL
  ENSMUST00000178342.8 UniProtKB/TrEMBL
  ENSMUST00000178698.2 UniProtKB/TrEMBL
  ENSMUST00000179369.2 UniProtKB/TrEMBL
Gene3D-CATH 1.20.140.150 UniProtKB/TrEMBL
InterPro Claudin UniProtKB/TrEMBL
KEGG Report mmu:625650 UniProtKB/TrEMBL
  mmu:667256 UniProtKB/TrEMBL
  mmu:78092 UniProtKB/TrEMBL
MGD MGI:1925342 ENTREZGENE
NCBI Gene 667256 ENTREZGENE
PANTHER CLAUDIN UniProtKB/TrEMBL
  SPERMATOGENESIS-ASSOCIATED MULTIPASS TRANSMEMBRANE PROTEIN 1-RELATED UniProtKB/TrEMBL
PhenoGen Samt1b PhenoGen
UniProt A2BED8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-08-20 Samt1b  spermatogenesis associated multipass transmembrane protein 1b  4921511M17Rik  RIKEN cDNA 4921511M17 gene  Symbol and/or name change 5135510 APPROVED
2014-09-17 4921511M17Rik  RIKEN cDNA 4921511M17 gene  OTTMUSG00000019268  predicted gene, OTTMUSG00000019268  Symbol and/or name change 5135510 APPROVED