Gm10840 (predicted gene 10840) - Rat Genome Database

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Gene: Gm10840 (predicted gene 10840) Mus musculus
Analyze
Symbol: Gm10840
Name: predicted gene 10840
RGD ID: 1624756
MGI Page MGI
Description:
Type: protein-coding (Ensembl: TEC)
Previously known as: collagen alpha-1(I) chain; collagen alpha-1(I) chain-like; ENSMUSG00000075480
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911106,050,214 - 106,051,985 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11106,051,019 - 106,051,984 (+)EnsemblGRCm39 Ensembl
GRCm3811106,159,388 - 106,161,159 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11106,160,193 - 106,161,158 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map11E1NCBI
cM Map1168.89NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Gm10840Mousebiological_process involved_inND 2290270 MGIGO_REF:0000015

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Gm10840Mousecellular_component is_active_inND 2290270 MGIGO_REF:0000015

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Gm10840Mousemolecular_function enablesND 2290270 MGIGO_REF:0000015

PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073   PMID:18799693  



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Variants in Gm10840
52 total Variants

Predicted Target Of
Summary Value
Count of predictions:273
Count of miRNA genes:253
Interacting mature miRNAs:270
Transcripts:ENSMUST00000100326
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 49 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1302034Pkccl_mprotein kinase C content in lungs (mouse)Not determined1191604608121973369Mouse
1301012Vispl_mvisual placing (mouse)Not determined11101022590121973369Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
1301535Pas5b_mpulmonary adenoma susceptibility 5b (mouse)Not determined1196176465108806384Mouse
1300766Skull16_mskull morphology 16 (mouse)Not determined1181574481115574636Mouse
12910539Sstapa3_msuseptibility to Staphylococcus aureus infection 3 (mouse)1196897693110603991Mouse
4141612Cia40_mcollagen induced arthritis 40 (mouse)Not determined11103273992115021444Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156864027114157957Mouse
14747003Mancz9_mmandible centroid size 9 (mouse)1185844911119844911Mouse
1301640Lore4_mloss of righting induced by ethanol 4 (mouse)Not determined1179156009107616472Mouse

1 to 10 of 49 rows





RefSeq Transcripts XM_030246469 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK131734 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AV046664 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000100326
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11106,051,676 - 106,051,984 (+)Ensembl
GRCm38.p6 Ensembl11106,160,850 - 106,161,158 (+)Ensembl
Ensembl Acc Id: ENSMUST00000238639
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11106,051,019 - 106,051,983 (+)Ensembl
GRCm38.p6 Ensembl11106,160,193 - 106,161,157 (+)Ensembl
RefSeq Acc Id: XM_030246469   ⟹   XP_030102329
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911106,050,214 - 106,051,985 (+)NCBI
GRCm3811106,159,388 - 106,161,159 (+)NCBI
Sequence:
GenBank Protein BAE20788 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_030102329   ⟸   XM_030246469



Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000075480 Ensembl
MGD MGI:3642918 ENTREZGENE
NCBI Gene Gm10840 ENTREZGENE
PhenoGen Gm10840 PhenoGen
UniProt Q3V2K9_MOUSE UniProtKB/TrEMBL