Dnmt3aos (DNA methyltransferase 3A, opposite strand) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Dnmt3aos (DNA methyltransferase 3A, opposite strand) Mus musculus
Analyze
Symbol: Dnmt3aos
Name: DNA methyltransferase 3A, opposite strand
RGD ID: 1624665
MGI Page MGI
Description: INTERACTS WITH 2,4-dibromophenyl 2,4,5-tribromophenyl ether; pioglitazone; silicon dioxide
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: ENSMUSG00000073242; Gm10485
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39123,909,293 - 3,912,244 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl123,909,293 - 3,912,244 (-)EnsemblGRCm39 Ensembl
GRCm38123,859,293 - 3,862,244 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl123,859,293 - 3,862,244 (-)EnsemblGRCm38mm10GRCm38
MGSCv37123,859,293 - 3,862,244 (-)NCBIGRCm37MGSCv37mm9NCBIm37
Celera123,787,167 - 3,790,118 (-)NCBICelera
Cytogenetic Map12A1.1NCBI
cM Map121.99NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:14610273   PMID:16141072   PMID:16141073   PMID:24316575  


Genomics

Variants

.
Variants in Dnmt3aos
64 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:143
Count of miRNA genes:133
Interacting mature miRNAs:141
Transcripts:ENSMUST00000144896
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884410Bzwq15_mbi-zygomatic width QTL 15, 16 week (mouse)12365000029749999Mouse
1301393Dyscalc3_mdystrophic cardiac calcinosis 3 (mouse)Not determined12122418579Mouse
12910983Pifs1_mpeptide-induced fatal syndrome 1 (mouse)12130433078Mouse
4141436Chldq7_mcholesterol and HDL QTL 7 (mouse)Not determined12127920733Mouse
4141660Nbwa1_mNZB and NZW autoimmunity 1 (mouse)Not determined1234013434340302Mouse
1301143Skull17_mskull morphology 17 (mouse)Not determined12122418579Mouse
1301655Bmd12_mbone mineral density 12 (mouse)Not determined12124662697Mouse
1301207Circp1_mcircadian photosensitivity 1 (mouse)Not determined12133430339Mouse
11039525Tbbr2_mTrypanosoma brucei brucei response 2 (mouse)12122418579Mouse
4141296Femwf9_mfemur work to failure 9 (mouse)Not determined127920733Mouse
1301925Ath6_matherosclerosis 6 (mouse)Not determined12132758756Mouse
1357519Vtbt12_mvertebral trabecular bone trait 12 (mouse)Not determined12124662697Mouse
10402496Lmr22_mleishmaniasis resistance 22 (mouse)Not determined12122418579Mouse


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000144896
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl123,909,293 - 3,912,244 (-)Ensembl
GRCm38.p6 Ensembl123,859,293 - 3,862,244 (-)Ensembl
RefSeq Acc Id: NR_045884
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39123,909,293 - 3,912,244 (-)NCBI
GRCm38123,859,293 - 3,862,244 (-)ENTREZGENE
Celera123,787,167 - 3,790,118 (-)ENTREZGENE
cM Map12 ENTREZGENE
Sequence:
Protein Sequences
GenBank Protein BAE29640 (Get FASTA)   NCBI Sequence Viewer  

Promoters
RGD ID:8677824
Promoter ID:EPDNEW_M16943
Type:multiple initiation site
Name:Dnmt3aos_1
Description:Mus musculus DNA methyltransferase 3A, opposite strand , longnon-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38123,862,213 - 3,862,273EPDNEW
RGD ID:15094057
Promoter ID:EPDNEWNC_M1963
Type:multiple initiation site
Name:Dnmt3aos_1
Description:DNA methyltransferase 3A, opposite strand [Source:MGISymbol;Acc:MGI:3641689]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38123,862,213 - 3,862,273EPDNEWNC

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000073242 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000144896 ENTREZGENE
MGD MGI:3641689 ENTREZGENE
NCBI Gene 100038522 ENTREZGENE
PhenoGen Dnmt3aos PhenoGen
RNAcentral URS000075D734 RNACentral
UniProt Q3UCH3_MOUSE UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-11-26 Dnmt3aos  DNA methyltransferase 3A, opposite strand    Dnmt3a opposite strand transcript  Symbol and/or name change 5135510 APPROVED
2013-11-05 Dnmt3aos  Dnmt3a opposite strand transcript  Gm10485  predicted gene 10485  Symbol and/or name change 5135510 APPROVED