F420014N23Rik (RIKEN cDNA F420014N23 gene) - Rat Genome Database

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Gene: F420014N23Rik (RIKEN cDNA F420014N23 gene) Mus musculus
Analyze
Symbol: F420014N23Rik
Name: RIKEN cDNA F420014N23 gene
RGD ID: 1624597
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: ENSMUSG00000074658
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910127,031,118 - 127,038,512 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl10127,031,118 - 127,038,512 (+)EnsemblGRCm39 Ensembl
GRCm3810127,195,249 - 127,202,643 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10127,195,249 - 127,202,643 (+)EnsemblGRCm38mm10GRCm38
MGSCv3710126,632,305 - 126,639,700 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera10129,588,313 - 129,595,708 (+)NCBICelera
Cytogenetic Map10D3NCBI
cM Map1074.5NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:14610273   PMID:16141072   PMID:16141073  


Genomics

Variants

.
Variants in F420014N23Rik
289 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:119
Count of miRNA genes:114
Interacting mature miRNAs:119
Transcripts:ENSMUST00000181578
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226772Tibl13_mtibia length 13, 10 week (mouse)1018875748129635869Mouse
27095911Pglq15_mpelvic girdle length QTL 15, 16 week (mouse)1039175996129635869Mouse
27226764Tibl19_mtibia length 19, 16 week (mouse)1039175996129635869Mouse
26884405Huml2_mhumerus length 2, 5 week (mouse)1069735830130430862Mouse
1357544Vtbt10_mvertebral trabecular bone trait 10 (mouse)Not determined1097217101130530862Mouse
4142461Bmd25_mbone mineral density 25 (mouse)Not determined1097217101130530862Mouse
11533919Mvb4_mmodifier of vibrator 4 (mouse)397217101130530862Mouse
11533921Mvb2_mmodifier of vibrator 2 (mouse)1097217101130530862Mouse
12880413V125Dq9_mvitamin D active form serum level QTL 9 (mouse)1097535905130530862Mouse
4141402T2dm1sa_mtype 2 diabetes mellitus 1 in SMXA RI mice (mouse)Not determined97758644130530862Mouse
11040593Lmr5e_mleishmaniasis resistance 5e (mouse)1099220635130530862Mouse
11040595Lmr5c_mleishmaniasis resistance 5c (mouse)1099220635130530862Mouse
11040597Lmr5a_mleishmaniasis resistance 5a (mouse)1099220635130530862Mouse
1357744Cfbw4_mcystic fibrosis body weight 4 (mouse)Not determined10100986516130530862Mouse
1301968Estq4_mestradiol regulated response QTL 4 (mouse)Not determined10100986516130530862Mouse
1301901Im5_mimmunoregulatory 5 (mouse)Not determined10101497164130530862Mouse
4141361Cfmq3_mcystic fibrosis modifier QTL 3 (mouse)Not determined10101497164130530862Mouse
1300678Leg2_mlongevity extending gene 2 (mouse)Not determined10102506908130530862Mouse
1301895Exq1_mexploratory and excitability QTL 1 (mouse)Not determined10102847852130530862Mouse
14696727Kidrq2_mkidney weight, right QTL 2 (mouse)10102902508130530862Mouse
4141007Obrq10_mobesity resistance QTL 10 (mouse)Not determined103243727130530862Mouse
4141487Tgq21_mtriglyceride QTL 21 (mouse)Not determined104110021130530862Mouse
14746996Manh69_mmandible shape 69 (mouse)10104763638130530862Mouse
1302200Sle12_msystematic lupus erythematosus susceptibility 12 (mouse)Not determined10105041304130530862Mouse
1357482Nhdlq4_mnon-HDL QTL 4 (mouse)Not determined10105041304130530862Mouse
1300679Nociq2_mnociceptive sensitivity inflammatory QTL 2 (mouse)Not determined10105041304130530862Mouse
11040594Lmr5f_mleishmaniasis resistance 5f (mouse)10105179713130530862Mouse
11040596Lmr5d_mleishmaniasis resistance 5d (mouse)10105179713130530862Mouse
11040598Lmr5b_mleishmaniasis resistance 5b (mouse)10105179713130530862Mouse
4142089Obrq9_mobesity resistance QTL 9 (mouse)Not determined108515907130530862Mouse
4141153Ltgq2_mliver triglyceride QTL 2 (mouse)Not determined108515907130530862Mouse
11041664Lmr25_mleishmaniasis resistance 25 (mouse)10108575094130530862Mouse
11039496Ltpr5b_mLeishmania tropica response 5b (mouse)10108575094130530862Mouse
11049570Lmr25b_mleishmaniasis resistance 25b (mouse)10108575094130530862Mouse
11049563Lmr25a_mleishmaniasis resistance 25a (mouse)10108575094130530862Mouse
12911218Frct3a_mfear conditioning traits 3a (mouse)10122785970129466996Mouse
12911220Frct3c_mfear conditioning traits 3c (mouse)10122785970129466996Mouse
12879490Frct3_mfear conditioning traits 3 (mouse)10122785970129466996Mouse
12904001Opfaq10_mopen field activity QTL 10 (mouse)10125633671129466375Mouse

Markers in Region
Pip4k2c  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3810127,198,225 - 127,199,041UniSTSGRCm38
MGSCv3710126,635,281 - 126,636,097UniSTSGRCm37
Celera10129,591,289 - 129,592,105UniSTS
Cytogenetic Map10D3UniSTS
cM Map10 UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000181578
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10127,031,118 - 127,038,512 (+)Ensembl
GRCm38.p6 Ensembl10127,195,249 - 127,202,643 (+)Ensembl
RefSeq Acc Id: ENSMUST00000219079
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10127,031,118 - 127,036,619 (+)Ensembl
GRCm38.p6 Ensembl10127,195,249 - 127,200,750 (+)Ensembl
RefSeq Acc Id: NR_045715
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910127,031,118 - 127,038,512 (+)NCBI
GRCm3810127,195,249 - 127,202,643 (+)ENTREZGENE
Celera10129,588,313 - 129,595,707 (+)ENTREZGENE
cM Map10 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_045716
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910127,031,118 - 127,038,512 (+)NCBI
GRCm3810127,195,249 - 127,202,643 (+)ENTREZGENE
Celera10129,588,313 - 129,595,707 (+)ENTREZGENE
cM Map10 ENTREZGENE
Sequence:
Protein Sequences
GenBank Protein BAE38092 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences

Promoters
RGD ID:8673474
Promoter ID:EPDNEW_M14768
Type:initiation region
Name:F420014N23Rik_1
Description:Mus musculus RIKEN cDNA F420014N23 gene , transcript variant2, long non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3810127,195,279 - 127,195,339EPDNEW
RGD ID:15093868
Promoter ID:EPDNEWNC_M1778
Type:multiple initiation site
Name:F420014N23Rik_1
Description:RIKEN cDNA F420014N23 gene [Source:MGISymbol;Acc:MGI:3642477]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3810127,195,279 - 127,195,339EPDNEWNC

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000097331 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000181578 ENTREZGENE
MGD MGI:3642477 ENTREZGENE
NCBI Gene 100038591 ENTREZGENE
PhenoGen F420014N23Rik PhenoGen
RNAcentral URS000075A11C RNACentral
  URS000075E156 RNACentral
UniProt Q3TNJ6_MOUSE UniProtKB/TrEMBL