Gm5885 (predicted gene 5885) - Rat Genome Database

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Gene: Gm5885 (predicted gene 5885) Mus musculus
Analyze
Symbol: Gm5885
Name: predicted gene 5885
RGD ID: 1624476
MGI Page MGI
Description:
Type: protein-coding (Ensembl: lncRNA)
RefSeq Status: PREDICTED
Previously known as: EG545884; uncharacterized protein LOC545884
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396133,506,152 - 133,509,725 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6133,506,152 - 133,509,725 (+)EnsemblGRCm39 Ensembl
GRCm39 Ensembl6133,506,185 - 133,508,453 (+)EnsemblGRCm39 Ensembl
GRCm386133,529,189 - 133,532,762 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6133,529,189 - 133,532,762 (+)EnsemblGRCm38mm10GRCm38
MGSCv376133,479,207 - 133,482,780 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366133,494,882 - 133,498,455 (+)NCBIMGSCv36mm8
Cytogenetic Map6G1NCBI
cM Map664.03NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



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Reference Title
Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions


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Variants in Gm5885
371 total Variants

Predicted Target Of
Summary Value
Count of predictions:35
Count of miRNA genes:33
Interacting mature miRNAs:35
Transcripts:ENSMUST00000178578
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 43 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
4142079Skmw15_mskeletal muscle weight 15 (mouse)Not determined6116829851149588044Mouse
10043864T2dm4sa_mtype 2 diabetes mellitus 4 in SMXA RI mice (mouse)Not determined683690851146954059Mouse
11252138Clas1_mcarcinogen-induced lung adenoma susceptibility 1 (mouse)6112246918146954059Mouse
10449437Pas15_mpulmonary adenoma susceptibility 15 (mouse)6128180868149588044Mouse
10449436Pas17_mpulmonary adenoma susceptibility 17 (mouse)6124334273145601739Mouse
1300887Pabr1_mplasma apolipoprotein B (human) regulator 1 (mouse)Not determined6103754405136400690Mouse
1301658Radpf3_mradiation pulmonary fibrosis 3 (mouse)Not determined6115219814146330736Mouse
4141940W6q5_mweight 6 weeks QTL 5 (mouse)Not determined96632912146535124Mouse
4140980Mvwf2_mmodifier of von Willebrand factor 2 (mouse)Not determined114345693145601739Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46912919136400690Mouse

1 to 10 of 43 rows





RefSeq Transcripts NM_001185040 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC164610 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000178578
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6133,506,152 - 133,509,725 (+)Ensembl
GRCm38.p6 Ensembl6133,529,189 - 133,532,762 (+)Ensembl
Ensembl Acc Id: ENSMUST00000203357
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6133,506,185 - 133,508,453 (+)Ensembl
GRCm38.p6 Ensembl6133,529,222 - 133,531,490 (+)Ensembl
RefSeq Acc Id: NM_001185040   ⟹   NP_001171969
RefSeq Status: PREDICTED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396133,506,152 - 133,509,725 (+)NCBI
GRCm386133,529,189 - 133,532,762 (+)ENTREZGENE
MGSCv376133,479,207 - 133,482,780 (+)RGD
cM Map6 ENTREZGENE
Sequence:
Protein RefSeqs NP_001171969 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001171969   ⟸   NM_001185040
- Peptide Label: precursor
- Sequence:

RGD ID:6891270
Promoter ID:EPDNEW_M9086
Type:multiple initiation site
Name:Gm5885_1
Description:Mus musculus predicted gene 5885 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm386133,529,191 - 133,529,251EPDNEW


Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000095412 Ensembl
  ENSMUSG00000121368 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000178578 ENTREZGENE
MGD MGI:3648672 ENTREZGENE
NCBI Gene 545884 ENTREZGENE
PhenoGen Gm5885 PhenoGen
RNAcentral URS0002618642 RNACentral