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Gene: 1700001G01Rik (RIKEN cDNA 1700001G01 gene) Mus musculus

Analyze

Symbol:

1700001G01Rik

Name:

RIKEN cDNA 1700001G01 gene

RGD ID:

1623918

MGI Page

MGI

Description:

Type:

ncrna (Ensembl: lncRNA)

RefSeq Status:

VALIDATED

Previously known as:

hypothetical protein LOC75433

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	18	17,168,565 - 17,270,616 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	18	17,152,089 - 17,271,170 (+)	Ensembl		GRCm39 Ensembl
GRCm38	18	17,035,508 - 17,137,559 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	18	17,019,051 - 17,137,559 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	18	17,177,585 - 17,206,077 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	18	17,162,094 - 17,190,586 (+)	NCBI		MGSCv36	mm8
Celera	18	17,554,667 - 17,656,731 (+)	NCBI		Celera
Cytogenetic Map	18	A1	NCBI
cM Map	18	10.34	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

Cellular Component

cellular_component (ND)

Molecular Function

molecular_function (ND)

References

Additional References at PubMed

PMID:10349636	PMID:11042159	PMID:11076861	PMID:11217851	PMID:12466851	PMID:16141072	PMID:16141073	PMID:24316575

Genomics

Variants

Variants in 1700001G01Rik
3703 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	208
Count of miRNA genes:	105
Interacting mature miRNAs:	105
Transcripts:	ENSMUST00000125117, ENSMUST00000136956, ENSMUST00000147119, ENSMUST00000153022
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
11354953	Mom21_m	modifier of Min 21 (mouse)					18	1	28893823	Mouse
13207585	Mwmlpt3_m	Morris water maze latency to platform, training, 3 (mouse)					18	1	33547739	Mouse
13207589	Mwmlpa3_m	Morris water maze latency to platform, all, 3 (mouse)					18	1	33547739	Mouse
1558873	Hrtfm7_m	heart failure modifier 7 (mouse)			Not determined		18	8086964	42087106	Mouse
4142127	Rafaril_m	Rafar interacting locus (mouse)			Not determined		18	1	23108555	Mouse
14928307	Manh83_m	mandible shape 83 (mouse)					18	1	26902168	Mouse
13432188	Actrse3_m	activity response to saline/ethanol 3 (mouse)					18	12374548	18574548	Mouse
12801458	Intmrm3_m	intima/media ratio modifier 3 (mouse)					18	1	31720756	Mouse
1300994	Pvcan3_m	protection against vaginal candidiasis 3 (mouse)			Not determined		18	16199640	50199776	Mouse
13432190	Actrse5_m	activity response to saline/ethanol 5 (mouse)					18	12174548	17574548	Mouse
13504732	Cath6_m	carotid atherosclerosis 6 (mouse)					18	13637126	47637126	Mouse
12801462	Intim3_m	intima modifier 3 (mouse)					18	1	31720756	Mouse
4142250	Idd21.3_m	insulin dependent diabetes susceptibility 21.3 (mouse)			Not determined		18	6108404	21646477	Mouse
1558849	W3q15_m	weight 3 weeks QTL 15 (mouse)			Not determined		18	5041119	61272643	Mouse
1357603	Mom3_m	modifier of Min 3 (mouse)			Not determined		18	14030023	67098962	Mouse
27226723	Tibw9_m	tibia width 9, proximal, 16 week (mouse)					18	3200000	60933072	Mouse

Markers in Region

D18Mit171

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	18	17,027,136 - 17,027,245	UniSTS	GRCm38
MGSCv37	18	17,185,645 - 17,185,754	UniSTS	GRCm37
Celera	18	17,546,295 - 17,546,404	UniSTS
Cytogenetic Map	18	A1	UniSTS
cM Map	18	11.0	UniSTS
Whitehead Genetic	18	7.7	UniSTS
Whitehead/MRC_RH	18	263.89	UniSTS
Whitehead_YAC	18		UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	NR_130158	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC125166	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC135806	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK005589	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK133007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSMUST00000125117

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	18	17,168,565 - 17,270,616 (+)	Ensembl
GRCm38.p6 Ensembl	18	17,035,508 - 17,137,559 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000136956

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	18	17,152,089 - 17,270,824 (+)	Ensembl
GRCm38.p6 Ensembl	18	17,125,787 - 17,137,514 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000147119

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	18	17,152,089 - 17,271,170 (+)	Ensembl
GRCm38.p6 Ensembl	18	17,019,051 - 17,137,559 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000153022

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	18	17,152,133 - 17,180,625 (+)	Ensembl
GRCm38.p6 Ensembl	18	17,019,076 - 17,047,568 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000313945

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	18	17,152,119 - 17,271,170 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000313946

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	18	17,152,089 - 17,270,822 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000313947

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	18	17,152,102 - 17,270,822 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000313948

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	18	17,152,101 - 17,270,819 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000313949

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	18	17,152,106 - 17,270,822 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000313950

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	18	17,152,108 - 17,270,822 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000313951

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	18	17,152,110 - 17,270,822 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000313952

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	18	17,152,119 - 17,270,822 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000313953

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	18	17,152,123 - 17,270,822 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000313954

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	18	17,152,126 - 17,270,824 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000313955

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	18	17,152,133 - 17,270,819 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000313956

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	18	17,152,147 - 17,270,822 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000313957

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	18	17,152,133 - 17,270,712 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000313958

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	18	17,152,139 - 17,270,712 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000313959

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	18	17,152,160 - 17,270,700 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000313960

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	18	17,152,093 - 17,270,618 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000313961

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	18	17,152,133 - 17,270,620 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000313962

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	18	17,152,133 - 17,270,620 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000313963

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	18	17,152,133 - 17,270,618 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000313964

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	18	17,152,136 - 17,270,618 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000313965

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	18	17,152,133 - 17,270,615 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000313966

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	18	17,152,140 - 17,270,620 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000313967

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	18	17,152,142 - 17,270,620 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000313968

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	18	17,152,149 - 17,270,618 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000313969

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	18	17,152,134 - 17,270,584 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000313970

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	18	17,152,147 - 17,270,584 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000313971

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	18	17,152,173 - 17,270,584 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000313972

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	18	17,152,128 - 17,259,053 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000313973

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	18	17,152,128 - 17,259,050 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000313974

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	18	17,168,581 - 17,270,652 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000313975

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	18	17,168,580 - 17,270,618 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000313976

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	18	17,168,590 - 17,270,618 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000313977

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	18	17,168,590 - 17,270,618 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000313978

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	18	17,169,340 - 17,270,615 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000313979

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	18	17,152,133 - 17,223,504 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000313980

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	18	17,152,124 - 17,190,858 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000313981

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	18	17,152,107 - 17,179,377 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000313982

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	18	17,152,126 - 17,178,971 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000313983

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	18	17,152,128 - 17,178,968 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000313984

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	18	17,152,133 - 17,178,971 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000313985

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	18	17,152,133 - 17,178,971 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000313986

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	18	17,152,126 - 17,178,922 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000313987

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	18	17,152,147 - 17,178,674 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000313988

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	18	17,152,160 - 17,178,658 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000313989

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	18	17,168,617 - 17,178,657 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000313990

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	18	17,152,115 - 17,159,789 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000313991

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	18	17,152,139 - 17,159,517 (+)	Ensembl

RefSeq Acc Id:

NR_130158

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	18	17,168,565 - 17,270,616 (+)	NCBI
GRCm38	18	17,035,508 - 17,137,559 (+)	NCBI
Celera	18	17,554,667 - 17,656,731 (+)	NCBI

Sequence:

show sequence

ATGGGAGAGCTGGCCATGAGGGCATGAGAGGAGAAGATCTGACCCCACCAACTGCAGTACTCAG
GAGAGCATTTTGCACGTGAGCCTGTCTCAGGAGTAGGAACATGGGAAATATTGCCCAATCACTC
AAGTCCTGTGTGGTGATGTGACTGTGTGGTGGCTTGGAAAAGGGAGAGATACCCTCTTCCTCCA
TTTCCGTCTCAACCCCTGTGGCATATAGGAGACCTGGCACTGAGGTAATGAGACCAGGAAAGAT
GGTCCTGCCTCTCACAAACTACAGCACTCAGGAAAGCAGCTGCATCTAACCTCAGTACTACTGA
CCCTGGTGTCAGGGATGCTGGCAAGACAGCTCTAAAGGTGGTGAAGTTGTCCTGACTGGATCAC
AAGAGCAGGAGAATTGTGTCTGCCCCTTCCTGAGGAGCACAATCAAGATGACTGTGGATGAAGG
GGTTTCAGTCAGCGTCAGCATGGAGTCACCTTGGGCACAGAGTCAGTGGACATGCCCACGGTCA
CTAGAGGACTCTCCACACGATCTTAGGACCACTGGTTTGAAGCCAAGCTGGGATTTTGATCACT
TCAACATGCTGATCAAATGGTTTACTTTAACGATGGAAAACAGACAGAATCTGTAAGACGATGC
AGGCAAGCTTATGTGAAATTTTCATTTCAAGCAACAGCTCAAAAAATGGAGGAGCCAAGCTCTC
TACAGATTGTTCAGGCCACATTTTCAGAGGTTGGATTTACAGAAATGCATACTCAGATAGAAGA
TAGCATTTGGGACATTTATTGAAGGACAATATCTGGATATATACCCGGGGAAGAGCTAAGATCA
TGCTGAGGTATGTGGCATATGACGGAGATCATGTGGGTGTCTGAAATCCATACTGTCACCAGAA
ACCTTGTAGAAGTTCATGATCATGTTCCTGTGACTGTAAAGGGCAAAGAAGCTACTTTTGCTGT
TATTACTGACTACAGAATCACAGTTGACAAAGAAGGACTTAGAAGACCTCTGTGACAACCCTCA
TGCTGATCCAAATAAGTAAGAGCCTAGAGAAAAAGCTATTGAAGGGGAATCCTAAAAGTTGTGA
TAAGGATCCTAAAGTGTAGTTCTCCACAGCTGATGGATTCTGAAGAGGTGCAGATTGTAATGCA
AATAGGCATTCCAATGCAGCATGTACTAAGAAAACACTAAAGACTGCTCAAAGAAACAATTCCT
GGTCTACATTGTCACTTGAACATTGAAATGGAAAACTGATTAGAACATACTGCGTGTTAAAAAC
ATCATGCAAAGGACACGAAAGGCAACATTGTCAAGGCATTTTGGAGGGTGCATCAGCTCACTTC
TTGAAAAATAAGAGAAGATGGAATCCTGCTTTTCCTTTCAGGGTAAAAAATAGTCTCCACGAAA
GAAAAAAAATCTCAATGAAGAACTCCAGACAGAACGCTGGGCAGAATGAAGTCCACTGGTTTGC
CATTATGATGAATTTAAGTATCCAGCCACCCATCCCATGAAAGCCAAAAAAAAAAAAACAGGTG
AAGATAAATAAACAGTTGTTCCAGTT

hide sequence

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSMUSG00000087170	Ensembl, ENTREZGENE
Ensembl Transcript	ENSMUST00000125117	ENTREZGENE
MGD	MGI:1922683	ENTREZGENE
NCBI Gene	75433	ENTREZGENE
PhenoGen	1700001G01Rik	PhenoGen
RNAcentral	URS0000763139	RNACentral
	URS0000767E67	RNACentral
	URS000076BE83	RNACentral
	URS00007810A8	RNACentral

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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