Krtap20-22 (keratin associated protein 20-22) - Rat Genome Database

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Gene: Krtap20-22 (keratin associated protein 20-22) Mus musculus
Analyze
No known orthologs.
Symbol: Krtap20-22
Name: keratin associated protein 20-22
RGD ID: 1623415
MGI Page MGI
Description: Orthologous to human KRTAP20-1 (keratin associated protein 20-1).
Type: protein-coding
RefSeq Status: MODEL
Previously known as: EG665661; Gm7735; keratin-associated protein 20-2-like; predicted gene, EG665661
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391688,966,378 - 88,966,536 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1688,966,378 - 88,966,536 (+)EnsemblGRCm39 Ensembl
GRCm381689,169,490 - 89,169,648 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1689,169,490 - 89,169,648 (+)EnsemblGRCm38mm10GRCm38
MGSCv371689,169,735 - 89,169,893 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361689,058,349 - 89,058,507 (+)NCBIMGSCv36mm8
Celera1689,372,406 - 89,372,564 (+)NCBICelera
Cytogenetic Map16C3.3NCBI
cM Map1651.42NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Krtap20-22
1 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:65
Count of miRNA genes:62
Interacting mature miRNAs:65
Transcripts:ENSMUST00000089098
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1302194Pgia10_mproteoglycan induced arthritis 10 (mouse)Not determined166860072298008968Mouse
26884376Skwq4_mskull length QTL 4, 5 week (mouse)16841786490896888Mouse
1302096Aod1a_mautoimmune ovarian dysgenesis 1a (mouse)Not determined163544664392573008Mouse
1558740Bpq9_mblood pressure QTL 9 (mouse)Not determined166332733697327472Mouse
4141113Tgq28_mtriglyceride QTL 28 (mouse)Not determined6298664696986646Mouse
1301364Lith14_mlithogenic gene 14 (mouse)Not determined165566184689661961Mouse
4142262Lmr18_mleishmaniasis resistance 18 (mouse)Not determined166912761198008968Mouse
11049573Lmr18b_mleishmaniasis resistance 18b (mouse)166912761198008968Mouse
1301598Renf2_mrenal failure 2 (mouse)Not determined167038025298008968Mouse
11049574Lmr18a_mleishmaniasis resistance 18a (mouse)166912761198008968Mouse
11522753Cocia19_mcocaine-induced activity, QTL 19 (mouse)166925448298008968Mouse
1300928Etia_methanol induced activation (mouse)Not determined166331390797314016Mouse
1301125Sluc27_msusceptibility to lung cancer 27 (mouse)Not determined166160864495608764Mouse
1301032Tauph_mtau phosphorylation (mouse)Not determined166907613298008968Mouse


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_006523124 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC117230 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000089098   ⟹   ENSMUSP00000086499
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1688,966,378 - 88,966,536 (+)Ensembl
GRCm38.p6 Ensembl1689,169,490 - 89,169,648 (+)Ensembl
RefSeq Acc Id: XM_006523124   ⟹   XP_006523187
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391688,966,378 - 88,966,536 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_006523187 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000086499
  ENSMUSP00000086499.2
Ensembl Acc Id: ENSMUSP00000086499   ⟸   ENSMUST00000089098
RefSeq Acc Id: XP_006523187   ⟸   XM_006523124
- UniProtKB: D3YX18 (UniProtKB/TrEMBL)
- Sequence:

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3YX18-F1-model_v2 AlphaFold D3YX18 1-52 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3649168 AgrOrtholog
Ensembl Genes ENSMUSG00000068068 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000089098 ENTREZGENE
  ENSMUST00000089098.2 UniProtKB/TrEMBL
InterPro KRTAP UniProtKB/TrEMBL
  KRTAP_matrix UniProtKB/TrEMBL
KEGG Report mmu:102637417 UniProtKB/TrEMBL
MGD MGI:3649168 ENTREZGENE
NCBI Gene Krtap20-22 ENTREZGENE
PANTHER KERATIN-ASSOCIATED PROTEIN 20-1 UniProtKB/TrEMBL
  KERATIN-ASSOCIATED PROTEIN 20-2 UniProtKB/TrEMBL
Pfam KRTAP UniProtKB/TrEMBL
PhenoGen Krtap20-22 PhenoGen
PROSITE PROKAR_LIPOPROTEIN UniProtKB/TrEMBL
UniProt D3YX18 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-02-26 Krtap20-22  keratin associated protein 20-22  Gm7735  predicted gene 7735  Symbol and/or name updated 27372883 PROVISIONAL