E330034G19Rik (RIKEN cDNA E330034G19 gene) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: E330034G19Rik (RIKEN cDNA E330034G19 gene) Mus musculus
Analyze
Symbol: E330034G19Rik
Name: RIKEN cDNA E330034G19 gene
RGD ID: 1623049
MGI Page MGI
Description: Acts upstream of or within positive regulation of proteasomal ubiquitin-dependent protein catabolic process. Located in cytoplasm and nucleus. Is expressed in several structures, including genitourinary system; heart; liver; lung; and thymus.
Type: protein-coding (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: AA415275; hypothetical protein LOC105418; RIKEN cDNA E330034G19; uncharacterized protein LOC105418; ZP; ZPAC; zygote-specific proteasome assembly chaperone
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391424,343,282 - 24,360,028 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1424,344,762 - 24,348,165 (+)EnsemblGRCm39 Ensembl
GRCm39 Ensembl1424,343,282 - 24,360,035 (+)EnsemblGRCm39 Ensembl
GRCm381424,293,214 - 24,309,960 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1424,293,214 - 24,309,966 (+)EnsemblGRCm38mm10GRCm38
MGSCv371425,112,586 - 25,129,181 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361423,125,829 - 23,142,424 (+)NCBIMGSCv36mm8
Celera1420,669,025 - 20,685,598 (+)NCBICelera
Cytogenetic Map14A3NCBI
cM Map1414.33NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
E330034G19RikMousepositive regulation of proteasomal ubiquitin-dependent protein catabolic process acts_upstream_of_or_withinIDA 2290270 PMID:23429752MGIPMID:23429752

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
E330034G19RikMousecytoplasm located_inIDA 2290270 PMID:23429752MGIPMID:23429752
E330034G19RikMousenucleus located_inIDA 2290270 PMID:23429752MGIPMID:23429752

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
E330034G19RikMouseprotein binding enablesIPIPR:Q9CQT52290270 PMID:23429752MGIPMID:23429752


#
Reference Title
Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:16141072   PMID:16141073   PMID:17567914   PMID:21267068   PMID:23429752  
PMID:24583807   PMID:26153379  



.

.
Variants in E330034G19Rik
422 total Variants

Predicted Target Of
Summary Value
Count of predictions:652
Count of miRNA genes:368
Interacting mature miRNAs:400
Transcripts:ENSMUST00000041413, ENSMUST00000160381, ENSMUST00000160710, ENSMUST00000161740, ENSMUST00000162224, ENSMUST00000163055
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 14 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1357589Kdnw2_mkidney weight 2 (mouse)Not determined1420887473121269804Mouse
27226748Femd8_mfemur midshaft diameter 8, 10 week (mouse)141376927346737457Mouse
1357527Epfpq1_mepididymal fat percentage QTL 1 (mouse)Not determined142106245071885801Mouse
11532711Sluc40_msusceptibility to lung cancer 40 (mouse)14127379943Mouse
4141265Appd2_mAPP associated premature death 2 (mouse)Not determined14594555230114862Mouse
1301372Sluc13_msusceptibility to lung cancer 13 (mouse)Not determined141882760452827726Mouse
4141550Dbm3_mdiabetes modifier 3 (mouse)Not determined514347339143596Mouse
1300544Hypn_mhyperinsulinemia (mouse)Not determined141516061649160765Mouse
1301991Wta3_mweight adult 3 (mouse)Not determined14388747337887650Mouse
4141864Mrdq4_mmodifier of retinal degeneration QTL 4 (mouse)Not determined992324548765082Mouse

1 to 10 of 14 rows
RH124379  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381424,309,499 - 24,309,691UniSTSGRCm38
MGSCv371425,128,721 - 25,128,913UniSTSGRCm37
Celera1420,685,138 - 20,685,330UniSTS
Cytogenetic Map14A3UniSTS
E330034G19Rik  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map14A3UniSTS
cM Map14 UniSTS







Ensembl Acc Id: ENSMUST00000160381
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1424,343,341 - 24,348,351 (+)Ensembl
GRCm38.p6 Ensembl1424,293,284 - 24,298,283 (+)Ensembl
Ensembl Acc Id: ENSMUST00000160710
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1424,343,400 - 24,360,028 (+)Ensembl
GRCm38.p6 Ensembl1424,293,332 - 24,298,052 (+)Ensembl
Ensembl Acc Id: ENSMUST00000161740   ⟹   ENSMUSP00000124917
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1424,293,364 - 24,309,959 (+)Ensembl
Ensembl Acc Id: ENSMUST00000162224
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1424,343,282 - 24,360,028 (+)Ensembl
GRCm38.p6 Ensembl1424,293,214 - 24,309,959 (+)Ensembl
Ensembl Acc Id: ENSMUST00000163055
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1424,343,304 - 24,360,035 (+)Ensembl
GRCm38.p6 Ensembl1424,293,236 - 24,308,264 (+)Ensembl
Ensembl Acc Id: ENSMUST00000239244
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1424,343,387 - 24,360,034 (+)Ensembl
GRCm38.p6 Ensembl1424,293,319 - 24,309,966 (+)Ensembl
Ensembl Acc Id: ENSMUST00000239268
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1424,344,762 - 24,348,165 (+)Ensembl
GRCm38.p6 Ensembl1424,294,694 - 24,298,097 (+)Ensembl
Ensembl Acc Id: ENSMUST00000305066
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1424,343,506 - 24,348,356 (+)Ensembl
Ensembl Acc Id: ENSMUST00000305067
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1424,343,522 - 24,348,349 (+)Ensembl
Ensembl Acc Id: ENSMUST00000305068
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1424,343,527 - 24,348,351 (+)Ensembl
Ensembl Acc Id: ENSMUST00000305069
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1424,357,500 - 24,360,028 (+)Ensembl
Ensembl Acc Id: ENSMUST00000305070
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1424,357,514 - 24,360,028 (+)Ensembl
Ensembl Acc Id: ENSMUST00000305071
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1424,357,546 - 24,360,028 (+)Ensembl
Ensembl Acc Id: ENSMUST00000305072
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1424,357,805 - 24,360,028 (+)Ensembl
Ensembl Acc Id: ENSMUST00000305073
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1424,357,956 - 24,360,028 (+)Ensembl
Ensembl Acc Id: ENSMUST00000305074
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1424,346,759 - 24,348,351 (+)Ensembl
Ensembl Acc Id: ENSMUST00000305075
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1424,359,254 - 24,360,035 (+)Ensembl
RefSeq Acc Id: NM_001033214   ⟹   NP_001028386
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391424,343,432 - 24,360,027 (+)NCBI
GRCm381424,293,364 - 24,309,959 (+)NCBI
MGSCv371425,112,586 - 25,129,181 (+)RGD
Celera1420,669,025 - 20,685,598 (+)RGD
cM Map14 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001346536   ⟹   NP_001333465
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391424,343,282 - 24,360,027 (+)NCBI
GRCm381424,293,214 - 24,309,959 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001379547   ⟹   NP_001366476
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391424,343,304 - 24,360,028 (+)NCBI
GRCm381424,293,236 - 24,309,960 (+)NCBI
Sequence:
RefSeq Acc Id: NP_001028386   ⟸   NM_001033214
- Peptide Label: isoform 1
- UniProtKB: Q3UWX6 (UniProtKB/TrEMBL),   E9PWE7 (UniProtKB/TrEMBL),   Q8C2V6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001333465   ⟸   NM_001346536
- Peptide Label: isoform 2
- UniProtKB: Q8C2V6 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001366476   ⟸   NM_001379547
- Peptide Label: isoform 3
- UniProtKB: Q8C2V6 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSMUSP00000124917   ⟸   ENSMUST00000161740

Name Modeler Protein Id AA Range Protein Structure
AF-Q3UWX6-F1-model_v2 AlphaFold Q3UWX6 1-351 view protein structure

RGD ID:8681674
Promoter ID:EPDNEW_M18867
Type:initiation region
Name:E330034G19Rik_1
Description:Mus musculus RIKEN cDNA E330034G19 gene , transcript variant1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381424,293,459 - 24,293,519EPDNEW


1 to 18 of 18 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000038925 Ensembl
  ENSMUSG00000121465 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000162224 ENTREZGENE
  ENSMUST00000163055 ENTREZGENE
  ENSMUST00000239244 ENTREZGENE
KEGG Report mmu:105418 UniProtKB/TrEMBL
MGD MGI:2145557 ENTREZGENE
NCBI Gene 105418 ENTREZGENE
PhenoGen E330034G19Rik PhenoGen
RNAcentral URS0002617BD0 RNACentral
  URS0002617D90 RNACentral
  URS0002617EF1 RNACentral
  URS0002618556 RNACentral
UniProt E9PWE7 ENTREZGENE
  Q3TQT7_MOUSE UniProtKB/TrEMBL
  Q3UWX6 ENTREZGENE, UniProtKB/TrEMBL
  Q8C2V6 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary E9PWE7 UniProtKB/TrEMBL
1 to 18 of 18 rows