Hexd (hexosaminidase D) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Hexd (hexosaminidase D) Mus musculus
Analyze
Symbol: Hexd
Name: hexosaminidase D
RGD ID: 1622930
MGI Page MGI
Description: Enables beta-N-acetylhexosaminidase activity. Predicted to be involved in carbohydrate metabolic process. Located in cytoplasm and nucleus. Orthologous to human HEXD (hexosaminidase D).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: BC069960; beta-hexosaminidase D; beta-N-acetylhexosaminidase; Hexdc; hexosaminidase (glycosyl hydrolase family 20, catalytic domain) containing; hexosaminidase domain-containing protein; MGC78289; N-acetyl-beta-galactosaminidase
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911121,095,187 - 121,113,485 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11121,095,259 - 121,113,481 (+)EnsemblGRCm39 Ensembl
GRCm3811121,204,353 - 121,222,657 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11121,204,433 - 121,222,655 (+)EnsemblGRCm38mm10GRCm38
MGSCv3711121,065,747 - 121,083,970 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611121,023,793 - 121,038,737 (+)NCBIMGSCv36mm8
Celera11132,943,272 - 132,960,890 (+)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1185.08NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IDA)
extracellular vesicle  (ISO,ISS)
nucleus  (IDA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:16141072   PMID:16141073   PMID:19040401   PMID:19723774   PMID:21267068  
PMID:21807949   PMID:21873635  


Genomics

Comparative Map Data
Hexd
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911121,095,187 - 121,113,485 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11121,095,259 - 121,113,481 (+)EnsemblGRCm39 Ensembl
GRCm3811121,204,353 - 121,222,657 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11121,204,433 - 121,222,655 (+)EnsemblGRCm38mm10GRCm38
MGSCv3711121,065,747 - 121,083,970 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611121,023,793 - 121,038,737 (+)NCBIMGSCv36mm8
Celera11132,943,272 - 132,960,890 (+)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1185.08NCBI
HEXD
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381782,418,347 - 82,442,645 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1782,418,318 - 82,442,645 (+)EnsemblGRCh38hg38GRCh38
GRCh371780,376,223 - 80,400,521 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361777,969,541 - 77,993,805 (+)NCBINCBI36Build 36hg18NCBI36
Celera1776,968,356 - 76,992,266 (+)NCBICelera
Cytogenetic Map17q25.3NCBI
HuRef1775,774,812 - 75,798,787 (+)NCBIHuRef
CHM1_11780,462,456 - 80,486,808 (+)NCBICHM1_1
T2T-CHM13v2.01783,287,277 - 83,311,569 (+)NCBIT2T-CHM13v2.0
Hexd
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810106,978,426 - 107,002,252 (+)NCBIGRCr8
mRatBN7.210106,479,781 - 106,498,799 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10106,480,194 - 106,498,799 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx10111,582,417 - 111,601,004 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.010111,045,470 - 111,064,057 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.010106,400,632 - 106,419,225 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.010110,406,431 - 110,425,042 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10110,406,450 - 110,425,042 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010109,993,108 - 110,011,700 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410110,436,882 - 110,455,475 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera10105,018,593 - 105,037,023 (+)NCBICelera
Cytogenetic Map10q32.3NCBI
Hexd
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955506702,919 - 718,572 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955506702,828 - 719,733 (-)NCBIChiLan1.0ChiLan1.0
HEXD
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21998,958,209 - 98,982,341 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan117103,862,311 - 103,886,435 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01776,829,716 - 76,853,717 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11782,636,493 - 82,660,727 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1782,637,972 - 82,660,674 (+)Ensemblpanpan1.1panPan2
HEXD
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha9544,173 - 560,924 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.09535,501 - 552,235 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl9535,819 - 551,864 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.19530,041 - 546,789 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.09691,451 - 707,981 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.09766,279 - 782,810 (-)NCBIUU_Cfam_GSD_1.0
Hexd
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602500,342 - 512,717 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493692358,504 - 69,503 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493692357,363 - 69,627 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HEXD
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl12662,497 - 679,174 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.112662,495 - 677,953 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21242,141 - 58,555 (+)NCBISscrofa10.2Sscrofa10.2susScr3
HEXD
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11674,338,079 - 74,360,649 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1674,339,326 - 74,360,407 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607745,973,051 - 45,996,600 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hexd
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480111,192,744 - 11,209,268 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462480111,192,718 - 11,209,268 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Hexd
585 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1785
Count of miRNA genes:619
Interacting mature miRNAs:759
Transcripts:ENSMUST00000038831, ENSMUST00000106117, ENSMUST00000124761, ENSMUST00000124768, ENSMUST00000124925, ENSMUST00000128913, ENSMUST00000131009, ENSMUST00000151495
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11251723Ewc5_methanol withdrawal and consumption 5 (mouse)1189869251121973369Mouse
1302034Pkccl_mprotein kinase C content in lungs (mouse)Not determined1191604608121973369Mouse
1300944Alcp20_malcohol preference locus 20 (mouse)Not determined1195403965121973369Mouse
1301012Vispl_mvisual placing (mouse)Not determined11101022590121973369Mouse
1301983Berr2_mberghei resistance locus 2 (mouse)Not determined1198352609121973369Mouse
1300962Cd8mts4_mCD8 memory T cell subset 4 (mouse)Not determined1196137674121973369Mouse
10043976Obq33_mobesity QTL 33 (mouse)Not determined1198500469121973369Mouse
1301057Nidd4_mnon-insulin-dependent diabetes mellitus 4 (mouse)Not determined1196810136121973369Mouse
1301095El6_mepilepsy 6 (mouse)Not determined1193229183121973369Mouse
1301958Alcp18_malcohol preference locus 18 (mouse)Not determined1195403965121973369Mouse
1558753Ath19_matherosclerosis 19 (mouse)Not determined1191604608121973369Mouse
10044001Alcw8_malcohol withdrawal 8 (mouse)Not determined1199254187121973369Mouse
27226789Feml16_mfemur length 16, 10 week (mouse)1187490826121873369Mouse
11553867Stmm5_mskin tumor modifier of MSM 5 (mouse)11100058103121973369Mouse
10044007Hbnr14_mHeligmosomoides bakeri nematode resistance 14 (mouse)Not determined1187502600121502698Mouse


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001001333 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001146073 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006533264 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006533265 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006533266 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006533267 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006533268 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006533269 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011249002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017314545 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156678 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156679 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004936958 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004936959 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004936960 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_879650 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AI481765 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK154237 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL808021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC056487 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC069960 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY206924 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY242213 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY263070 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY296469 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466558 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EF437388 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FM204885 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FM204886 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000038831   ⟹   ENSMUSP00000048479
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11121,095,259 - 121,113,481 (+)Ensembl
GRCm38.p6 Ensembl11121,204,433 - 121,222,655 (+)Ensembl
Ensembl Acc Id: ENSMUST00000106117   ⟹   ENSMUSP00000101723
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11121,095,261 - 121,113,473 (+)Ensembl
GRCm38.p6 Ensembl11121,204,435 - 121,222,647 (+)Ensembl
Ensembl Acc Id: ENSMUST00000124761   ⟹   ENSMUSP00000116406
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11121,102,876 - 121,111,851 (+)Ensembl
GRCm38.p6 Ensembl11121,212,050 - 121,221,025 (+)Ensembl
Ensembl Acc Id: ENSMUST00000124768   ⟹   ENSMUSP00000122008
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11121,097,464 - 121,105,761 (+)Ensembl
GRCm38.p6 Ensembl11121,206,638 - 121,214,935 (+)Ensembl
Ensembl Acc Id: ENSMUST00000124925
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11121,095,584 - 121,113,473 (+)Ensembl
GRCm38.p6 Ensembl11121,204,758 - 121,222,647 (+)Ensembl
Ensembl Acc Id: ENSMUST00000128913
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11121,095,601 - 121,110,715 (+)Ensembl
GRCm38.p6 Ensembl11121,204,775 - 121,219,889 (+)Ensembl
Ensembl Acc Id: ENSMUST00000131009
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11121,095,627 - 121,105,660 (+)Ensembl
GRCm38.p6 Ensembl11121,204,801 - 121,214,834 (+)Ensembl
Ensembl Acc Id: ENSMUST00000151495   ⟹   ENSMUSP00000123073
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11121,098,529 - 121,113,473 (+)Ensembl
GRCm38.p6 Ensembl11121,207,703 - 121,222,647 (+)Ensembl
RefSeq Acc Id: NM_001001333   ⟹   NP_001001333
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911121,095,259 - 121,113,482 (+)NCBI
GRCm3811121,204,433 - 121,222,656 (+)ENTREZGENE
MGSCv3711121,065,747 - 121,083,970 (+)RGD
Celera11132,943,272 - 132,960,890 (+)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001146073   ⟹   NP_001139545
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911121,098,469 - 121,113,482 (+)NCBI
GRCm3811121,207,643 - 121,222,656 (+)NCBI
MGSCv3711121,065,747 - 121,083,970 (+)RGD
Celera11132,943,272 - 132,960,890 (+)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006533264   ⟹   XP_006533327
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911121,095,188 - 121,113,485 (+)NCBI
GRCm3811121,204,356 - 121,222,657 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006533265   ⟹   XP_006533328
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911121,095,374 - 121,113,482 (+)NCBI
GRCm3811121,204,897 - 121,222,656 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006533266   ⟹   XP_006533329
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911121,096,426 - 121,113,482 (+)NCBI
GRCm3811121,205,581 - 121,222,656 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006533267   ⟹   XP_006533330
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911121,096,673 - 121,113,485 (+)NCBI
GRCm3811121,205,852 - 121,222,657 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006533268   ⟹   XP_006533331
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911121,097,552 - 121,113,485 (+)NCBI
GRCm3811121,206,728 - 121,222,657 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006533269   ⟹   XP_006533332
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911121,095,579 - 121,113,482 (+)NCBI
GRCm3811121,204,359 - 121,222,657 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011249002   ⟹   XP_011247304
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911121,098,469 - 121,113,485 (+)NCBI
GRCm3811121,205,874 - 121,222,656 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017314545   ⟹   XP_017170034
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911121,105,961 - 121,113,485 (+)NCBI
GRCm3811121,215,134 - 121,222,656 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036156677   ⟹   XP_036012570
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911121,098,469 - 121,113,485 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036156678   ⟹   XP_036012571
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911121,095,187 - 121,113,485 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036156679   ⟹   XP_036012572
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911121,098,469 - 121,111,487 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004936958
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911121,098,469 - 121,113,485 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004936959
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911121,098,469 - 121,113,485 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004936960
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911121,105,961 - 121,113,485 (+)NCBI
Sequence:
RefSeq Acc Id: XR_879650
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911121,098,469 - 121,112,416 (+)NCBI
GRCm3811121,207,643 - 121,221,590 (+)NCBI
Sequence:
RefSeq Acc Id: NP_001001333   ⟸   NM_001001333
- Peptide Label: isoform 2
- UniProtKB: B7UUP5 (UniProtKB/Swiss-Prot),   B7UUP4 (UniProtKB/Swiss-Prot),   Q6NSQ8 (UniProtKB/Swiss-Prot),   Q3U4H6 (UniProtKB/Swiss-Prot),   F6UV46 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001139545   ⟸   NM_001146073
- Peptide Label: isoform 1
- UniProtKB: F6UV46 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006533327   ⟸   XM_006533264
- Peptide Label: isoform X2
- UniProtKB: F6UV46 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006533332   ⟸   XM_006533269
- Peptide Label: isoform X2
- UniProtKB: F6UV46 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006533328   ⟸   XM_006533265
- Peptide Label: isoform X2
- UniProtKB: F6UV46 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006533330   ⟸   XM_006533267
- Peptide Label: isoform X2
- UniProtKB: F6UV46 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006533331   ⟸   XM_006533268
- Peptide Label: isoform X2
- UniProtKB: F6UV46 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006533329   ⟸   XM_006533266
- Peptide Label: isoform X2
- UniProtKB: F6UV46 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011247304   ⟸   XM_011249002
- Peptide Label: isoform X3
- UniProtKB: F6UV46 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017170034   ⟸   XM_017314545
- Peptide Label: isoform X6
- Sequence:
Ensembl Acc Id: ENSMUSP00000116406   ⟸   ENSMUST00000124761
Ensembl Acc Id: ENSMUSP00000122008   ⟸   ENSMUST00000124768
Ensembl Acc Id: ENSMUSP00000123073   ⟸   ENSMUST00000151495
Ensembl Acc Id: ENSMUSP00000101723   ⟸   ENSMUST00000106117
Ensembl Acc Id: ENSMUSP00000048479   ⟸   ENSMUST00000038831
RefSeq Acc Id: XP_036012571   ⟸   XM_036156678
- Peptide Label: isoform X4
- UniProtKB: Q3U4H6 (UniProtKB/Swiss-Prot),   B7UUP5 (UniProtKB/Swiss-Prot),   B7UUP4 (UniProtKB/Swiss-Prot),   Q6NSQ8 (UniProtKB/Swiss-Prot),   F6UV46 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036012570   ⟸   XM_036156677
- Peptide Label: isoform X1
- UniProtKB: F6UV46 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036012572   ⟸   XM_036156679
- Peptide Label: isoform X5
- UniProtKB: F7B4F0 (UniProtKB/TrEMBL)
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q3U4H6-F1-model_v2 AlphaFold Q3U4H6 1-486 view protein structure

Promoters
RGD ID:6821051
Promoter ID:MM_KWN:11009
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4
Transcripts:ENSMUST00000038831,   ENSMUST00000106117,   NM_001001333,   OTTMUST00000009735,   OTTMUST00000009736,   OTTMUST00000063519,   OTTMUST00000063520
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3611121,065,496 - 121,065,996 (+)MPROMDB
RGD ID:8677770
Promoter ID:EPDNEW_M16915
Type:initiation region
Name:Hexdc_1
Description:Mus musculus hexosaminidase (glycosyl hydrolase family 20, catalyticdomain) containing , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3811121,204,433 - 121,204,493EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3605542 AgrOrtholog
Ensembl Genes ENSMUSG00000039307 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000038831 ENTREZGENE
  ENSMUST00000038831.15 UniProtKB/Swiss-Prot
  ENSMUST00000106117 ENTREZGENE
  ENSMUST00000106117.8 UniProtKB/Swiss-Prot
  ENSMUST00000124761.2 UniProtKB/TrEMBL
  ENSMUST00000124768.8 UniProtKB/TrEMBL
  ENSMUST00000151495 ENTREZGENE
  ENSMUST00000151495.8 UniProtKB/TrEMBL
Gene3D-CATH Glycosidases UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Glyco_hydro_20_cat UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Glycoside_hydrolase_SF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HEXDC-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:238023 UniProtKB/Swiss-Prot
MGD MGI:3605542 ENTREZGENE
NCBI Gene 238023 ENTREZGENE
PANTHER HEXOSAMINIDASE D UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR21040 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Glyco_hydro_20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Hexd PhenoGen
Superfamily-SCOP SSF51445 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt B0LAE9_MOUSE UniProtKB/TrEMBL
  B1AXL0_MOUSE UniProtKB/TrEMBL
  B7UUP4 ENTREZGENE
  B7UUP5 ENTREZGENE
  F6UV46 ENTREZGENE, UniProtKB/TrEMBL
  F7B4F0 ENTREZGENE, UniProtKB/TrEMBL
  HEXD_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q6NSQ8 ENTREZGENE
UniProt Secondary B7UUP4 UniProtKB/Swiss-Prot
  B7UUP5 UniProtKB/Swiss-Prot
  Q6NSQ8 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-06-19 Hexd  hexosaminidase D  Hexdc  hexosaminidase (glycosyl hydrolase family 20, catalytic domain) containing  Symbol and/or name updated 27372883 PROVISIONAL