A630077J23Rik (RIKEN cDNA A630077J23 gene)

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Gene: A630077J23Rik (RIKEN cDNA A630077J23 gene) Mus musculus

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Symbol:

A630077J23Rik

Name:

RIKEN cDNA A630077J23 gene

RGD ID:

1622852

MGI Page

MGI

Description:

Type:

ncrna

RefSeq Status:

PREDICTED

Previously known as:

hypothetical protein LOC319973

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	43,751,859 - 43,759,464 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm38	4	43,751,859 - 43,759,464 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
MGSCv37	4	43,764,140 - 43,770,383 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	42,585,930 - 42,592,178 (+)	NCBI		MGSCv36	mm8
MGSCv36	4	43,772,368 - 43,778,611 (+)	NCBI		MGSCv36	mm8
Celera	4	43,786,377 - 43,794,267 (+)	NCBI		Celera
Cytogenetic Map	4	A5	NCBI
cM Map	4	23.05	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

Cellular Component

cellular_component (ND)

Molecular Function

molecular_function (ND)

References

Additional References at PubMed

PMID:10349636	PMID:11042159	PMID:11076861	PMID:11217851	PMID:12466851	PMID:16141072	PMID:16141073	PMID:24316575

Genomics

Variants

Variants in A630077J23Rik
184 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	129
Count of miRNA genes:	127
Interacting mature miRNAs:	129
Transcripts:	ENSMUST00000142309
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1301203	Alcp8_m	alcohol preference locus 8 (mouse)			Not determined		4	17395160	51395290	Mouse
1301586	Stheal3_m	soft tissue heal 3 (mouse)			Not determined		4	28658442	62658566	Mouse
10401115	Pgia35_m	proteoglycan induced arthritis 35 (mouse)			Not determined		4	12562377	46562509	Mouse
39128211	Lwq22_m	liver weight QTL 22 (mouse)					4	17892616	88982216	Mouse
1301786	Bpq3_m	blood pressure QTL 3 (mouse)			Not determined		4	42402240	76402381	Mouse
4141555	Nbwa2_m	NZB and NZW autoimmunity 2 (mouse)			Not determined		4	17892515	51892635	Mouse
10412178	Habiir2_m	hyperoxic acute lung injury imprinted region 2 (mouse)			Not determined		4	39452126	63283678	Mouse
1300574	Im2_m	immunoregulatory 2 (mouse)			Not determined		4	28077682	62077816	Mouse
4142318	Lyr2_m	lymphoma resistance 2 (mouse)			Not determined			14010457	63283678	Mouse
12880405	Jcdq1_m	joint cartilage degeneration QTL 1 (mouse)					4	12562377	46562509	Mouse
1301697	Sluc18_m	susceptibility to lung cancer 18 (mouse)			Not determined		4	22373448	56373612	Mouse
1357453	Kidq4_m	kidney weight QTL 4 (mouse)			Not determined		4	17892616	88982216	Mouse
4142047	Mvwf3_m	modifier of von Willebrand factor 3 (mouse)			Not determined			14010457	117072206	Mouse
1357877	Synch1_m	synechia 1 (mouse)			Not determined		4	28709925	62710107	Mouse
11567249	Elorr3_m	ethanol induced loss of righting response 3 (mouse)					4	3722677	156268235	Mouse
1300977	Mopkd1_m	modifier of polycystic kidney disease progression 1 (mouse)			Not determined		4	36550839	70550967	Mouse
25440481	Moaq1_m	modifier of alien QTL 1 (mouse)					4	19500000	46000000	Mouse
1301237	Alcp7_m	alcohol preference locus 7 (mouse)			Not determined		4	17395160	51395290	Mouse
1302075	Bdln6_m	body length 6 (mouse)			Not determined		4	22373448	56373612	Mouse
4141911	W6q15_m	weight 6 weeks QTL 15 (mouse)			Not determined			17892616	88982216	Mouse
4142290	Ssrq9_m	stress response QTL 9 (mouse)			Not determined			34395160	46332776	Mouse
1301437	Scon1_m	sucrose consumption 1 (mouse)			Not determined		4	22373448	56373612	Mouse
10401905	Sicd3_m	seizure-induced cell death 3 (mouse)			Not determined		4	9395525	43760862	Mouse
1300769	Pcyts2_m	plasmacytoma susceptibility 2 (mouse)			Not determined		4	22111944	56112145	Mouse
1301792	Hdlq10_m	HDL QTL 10 (mouse)			Not determined		4	35859707	69859853	Mouse
1301990	Arvm1_m	autoimmune renal vasculitis 1 (mouse)			Not determined		4	29332646	63332776	Mouse
1302116	Bbaa1_m	B.burgdorferi-associated arthritis 1 (mouse)			Not determined		4	38250930	72251078	Mouse
1302058	Hrtfm3_m	heart failure modifier 3 (mouse)			Not determined		4	22111944	56112145	Mouse
1302184	Aaom1_m	autoimmune aoritis in MRL mice 1 (mouse)			Not determined		4	24322299	46332776	Mouse
27226724	Tibw2_m	tibia width 2, proximal, 10 week (mouse)					4	43000000	108357197	Mouse
26884449	Sklq2_m	skull length QTL 2, 5 week (mouse)					4	36700000	128993793	Mouse

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	NR_040667	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AK042273	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK087201	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AL773539	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

NR_040667

RefSeq Status:

PREDICTED

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	4	43,751,859 - 43,759,464 (+)	NCBI
GRCm38	4	43,751,859 - 43,759,464 (+)	ENTREZGENE
Celera	4	43,786,377 - 43,794,267 (+)	ENTREZGENE
cM Map	4		ENTREZGENE

Sequence:

show sequence

TTCGTATCGGACATCGGAGCAATGGACAGGTCTCTCCGCTAATAGGATGCTCTGTGGAGGAGCC
CTTGGGAGGGTCTCACTGTGCAGCCCTGGCTGACCTGGAAATTGCTGTGTAGTCTAGACGGGGC
TTGGACTCACAGAGATCCACCTGCCTCAGATAGGCTCCATTGCTCTCCGTCTTTTCCATCCTAC
GGTAGGAGTGTGCTTTGAGGAGTGACATCACAGGCTCTGGCTGACTCGCACTGTAAGGTAAGGT
CTATACCACAGGGATAATGAAGGTAGAAGCAGTGCGAACTGGGAGCTGAGGTATTCAAGGGCTG
AGCCCTGGCTCGCCCACCCTGCAGGCCTCTCTACTAGGCAGAGAGCTATGCTGCTGTCTTGTTT
AAGCAGTATAACTGGGAGACTCCACTTTCCTCGGTTAAACCCACTCCTTGCTGGTGAACACTCA
TTCCTTTACATCACATGACTCTTCACTGGCCTTCGCCAGTGAGTCTTAGGTCATTTCCTCTTAA
CTGTCCGAGTCCAAGTTCTTGTTCCTCAGATCACAAGCAGAGCTTGTTGAGAAGCTATCTTCAT
GCCTGCAGCAACGGATGAAGAATGTCCCAGCTACAGCTACTTCAACCAGTTCCCAAAATAGTTG
CCTGAAGCCCAGTAGGGACAGTATGACTCAGTTCCACTCCGCAGGACAGTGCTCATGCCAAACC
TGCCTGTTTCTGTAGAGGCAACTTCGTTGCTGGGAGAAGGGCATCAGGGACGCATGTGCAGAAC
CCATGGAAGTTTTCAGAAGACACAGCTAGTCTGTGTGTCTATCAGTCAGGCTTGGCAATATGTT
CCAGACTCATTCCTCTGTGACAAGCAACCCCATTTGTTCCTTAGGACAGCCTCCTTCTAGACTA
TGGTGTGCCCCAAAATCAGCTCATAAATATATCTTTGTCTGGAATAAAAAGTCGAACTGTT

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Additional Information

External Database Links

Database	Acc Id	Source(s)
MGD	MGI:2443089	ENTREZGENE
NCBI Gene	319973	ENTREZGENE
PhenoGen	A630077J23Rik	PhenoGen
RNAcentral	URS000075DBBE	RNACentral

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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