A630077J23Rik (RIKEN cDNA A630077J23 gene) - Rat Genome Database

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Gene: A630077J23Rik (RIKEN cDNA A630077J23 gene) Mus musculus
Analyze
Symbol: A630077J23Rik
Name: RIKEN cDNA A630077J23 gene
RGD ID: 1622852
MGI Page MGI
Description:
Type: ncrna
RefSeq Status: PREDICTED
Previously known as: hypothetical protein LOC319973
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39443,751,859 - 43,759,464 (+)NCBIGRCm39GRCm39mm39
GRCm38443,751,859 - 43,759,464 (+)NCBIGRCm38GRCm38mm10GRCm38
MGSCv37443,764,140 - 43,770,383 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36442,585,930 - 42,592,178 (+)NCBIMGSCv36mm8
MGSCv36443,772,368 - 43,778,611 (+)NCBIMGSCv36mm8
Celera443,786,377 - 43,794,267 (+)NCBICelera
Cytogenetic Map4A5NCBI
cM Map423.05NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
A630077J23RikMousebiological_process involved_inND 2290270 MGIGO_REF:0000015

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
A630077J23RikMousecellular_component is_active_inND 2290270 MGIGO_REF:0000015

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
A630077J23RikMousemolecular_function enablesND 2290270 MGIGO_REF:0000015

PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073   PMID:24316575  



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Variants in A630077J23Rik
360 total Variants

Predicted Target Of
Summary Value
Count of predictions:129
Count of miRNA genes:127
Interacting mature miRNAs:129
Transcripts:ENSMUST00000142309
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 31 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1301203Alcp8_malcohol preference locus 8 (mouse)Not determined41739516051395290Mouse
1301586Stheal3_msoft tissue heal 3 (mouse)Not determined42865844262658566Mouse
10401115Pgia35_mproteoglycan induced arthritis 35 (mouse)Not determined41256237746562509Mouse
39128211Lwq22_mliver weight QTL 22 (mouse)41789261688982216Mouse
1301786Bpq3_mblood pressure QTL 3 (mouse)Not determined44240224076402381Mouse
4141555Nbwa2_mNZB and NZW autoimmunity 2 (mouse)Not determined41789251551892635Mouse
10412178Habiir2_mhyperoxic acute lung injury imprinted region 2 (mouse)Not determined43945212663283678Mouse
1300574Im2_mimmunoregulatory 2 (mouse)Not determined42807768262077816Mouse
12880405Jcdq1_mjoint cartilage degeneration QTL 1 (mouse)41256237746562509Mouse
4142318Lyr2_mlymphoma resistance 2 (mouse)Not determined1401045763283678Mouse

1 to 10 of 31 rows






RefSeq Acc Id: NR_040667
RefSeq Status: PREDICTED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39443,751,859 - 43,759,464 (+)NCBI
GRCm38443,751,859 - 43,759,464 (+)ENTREZGENE
Celera443,786,377 - 43,794,267 (+)ENTREZGENE
cM Map4 ENTREZGENE
Sequence:


Database
Acc Id
Source(s)
MGD MGI:2443089 ENTREZGENE
NCBI Gene 319973 ENTREZGENE
PhenoGen A630077J23Rik PhenoGen
RNAcentral URS000075DBBE RNACentral