Mgat4f (MGAT4 family, member F) - Rat Genome Database

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Gene: Mgat4f (MGAT4 family, member F) Mus musculus
Analyze
Symbol: Mgat4f
Name: MGAT4 family, member F
RGD ID: 1622043
MGI Page MGI
Description: Predicted to enable acetylglucosaminyltransferase activity. Predicted to be involved in protein N-linked glycosylation. Is expressed in ductus deferens and testis. Orthologous to human MGAT4FP (MGAT4 family member F, pseudogene).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 4933406M09Rik; hypothetical protein LOC240755; RIKEN cDNA 4933406M09 gene; uncharacterized protein LOC240755
RGD Orthologs
Human
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391134,313,669 - 134,319,240 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1134,313,678 - 134,318,719 (+)EnsemblGRCm39 Ensembl
GRCm381134,385,931 - 134,391,502 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1134,385,940 - 134,390,981 (+)EnsemblGRCm38mm10GRCm38
MGSCv371136,282,517 - 136,287,560 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361136,202,351 - 136,207,394 (+)NCBIMGSCv36mm8
Celera1136,998,264 - 137,003,311 (+)NCBICelera
Cytogenetic Map1E4NCBI
cM Map158.21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:16141072   PMID:16141073   PMID:16602821   PMID:18799693   PMID:21873635   PMID:24194600  
PMID:27626380   PMID:38355793  


Genomics

Comparative Map Data
Mgat4f
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391134,313,669 - 134,319,240 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1134,313,678 - 134,318,719 (+)EnsemblGRCm39 Ensembl
GRCm381134,385,931 - 134,391,502 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1134,385,940 - 134,390,981 (+)EnsemblGRCm38mm10GRCm38
MGSCv371136,282,517 - 136,287,560 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361136,202,351 - 136,207,394 (+)NCBIMGSCv36mm8
Celera1136,998,264 - 137,003,311 (+)NCBICelera
Cytogenetic Map1E4NCBI
cM Map158.21NCBI
MGAT4FP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381202,986,452 - 203,007,265 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371202,955,580 - 202,976,393 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map1q32.1NCBI
HuRef1174,121,354 - 174,122,400 (-)NCBIHuRef
CHM1_11204,378,017 - 204,379,063 (-)NCBICHM1_1
T2T-CHM13v2.01202,249,168 - 202,269,972 (-)NCBIT2T-CHM13v2.0

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:111
Count of miRNA genes:108
Interacting mature miRNAs:111
Transcripts:ENSMUST00000162187
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27095901Scvln8_msacral vertebrae length 2, 10 week (mouse)194127725172027567Mouse
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
1302098Eila1_methanol induced locomotor activity 1 (mouse)Not determined1112008822175468938Mouse
1302161Exq2_mexploratory and excitability QTL 2 (mouse)Not determined1118099720152099816Mouse
27226779Tibl1_mtibia length 1, 5 week (mouse)195527725162027569Mouse
27226714Metcl1_mmetatarsal-calcaneal length 1, 5 week (mouse)1121727729139727738Mouse
14746980Manh50_mmandible shape 50 (mouse)1134131564168131564Mouse
10412185Hcs9_mhepatocarcinogenesis susceptibility 9 (mouse)Not determined163854690189303617Mouse
1301979Melm1_mmelanoma modifier 1 (mouse)Not determined1109638262143638479Mouse
1301722Cia9_mcollagen induced arthritis QTL 9 (mouse)Not determined145783900189303617Mouse
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
1301149Lrnx12_mlearning-contextual 12 (mouse)Not determined1112008822168186402Mouse
27226767Tibl10_mtibia length 10, 10 week (mouse)1121727729164827569Mouse
10045640Jckm4_mjuvenile cystic kidney modifier 4 (mouse)Not determined1116290836150290937Mouse
12790994Aaaq1_maortic arch angle QTL 1 (mouse)1109495943143495943Mouse
1301249Sbw1_msplenomegaly-NZB x NZW 1 (mouse)Not determined1112131005146131085Mouse
1301193Lxw3_mlupus BXSB x NZW 3 (mouse)Not determined1102968534136968667Mouse
1558860W10q7_mweight 10 weeks QTL 7 (mouse)Not determined134760138150193871Mouse
10412162Nobq3_mNew Zealand obese QTL 3 (mouse)Not determined1103933405191225397Mouse
12880408V125Dq3_mvitamin D active form serum level QTL 3 (mouse)1122927738156927738Mouse
27095935Ulnl5_mulna length 5, 10 week (mouse)1128727737181327565Mouse
1302128Ity3_mimmunity to S. typhimurium 3 (mouse)Not determined11131156308165139464Mouse
1357488Splq3_mspleen weight QTL 3 (mouse)Not determined134760138150193871Mouse
4141914Gcsfis_mG-CSF induced splenomegaly (mouse)Not determined74516235148715579Mouse
27095928Pglq6_mpelvic girdle length QTL 6, 10 week (mouse)175976637148775742Mouse
13524520Bodwtq1_mbody wweight QTL 1 (mouse)1131191160135621161Mouse
27226743Metcl7_mmetatarsal-calcaneal length 7, 10 week (mouse)1121727729153875746Mouse
1357439Popoa_mpremature ovulation and primary oocyte arrest (mouse)Not determined182643189135615379Mouse
27226740Metcl13_mmetatarsal-calcaneal length 13, 16 week (mouse)1121727729153775746Mouse
4142291Aec2_mautoimmune exocrinopathy 2 (mouse)Not determined52457737182250592Mouse
1357753Kidq2_mkidney weight QTL 2 (mouse)Not determined134760138150193871Mouse
1300989Lrdg1_mlight induced retinal degeneration 1 (mouse)Not determined173755175147125370Mouse
27226799Feml5_mfemur length 5, 5 week (mouse)1122027729164827569Mouse
1357600Obq17_mobesity QTL 17 (mouse)Not determined1110553179144553298Mouse
27095913Scvln2_msacral vertebrae length 2, 5 week (mouse)194127725148775742Mouse
1301350Nidd4k_mNidd4 on KK-A (mouse)Not determined782291982147125370Mouse
27095915Scvln13_msacral vertebrae length 2, 16 week (mouse)1117527730179827565Mouse
13513913Heal51_mwound healing/ regeneration 51 (mouse)1131780648135499606Mouse
1300841Ssial1_msusceptibility to sialadenitis 1 (mouse)Not determined163920002153557562Mouse
26884448Sklq1_mskull length QTL 1, 5 week (mouse)175976637181327565Mouse
1301608Emo3_memotionality 3 (mouse)Not determined1129130858163130993Mouse
10401248Bglu12_mblood glucose level 12 (mouse)Not determined1110553179144553298Mouse

Markers in Region
BB013868  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381134,390,891 - 134,390,977UniSTSGRCm38
MGSCv371136,287,468 - 136,287,554UniSTSGRCm37
Celera1137,003,219 - 137,003,305UniSTS
Cytogenetic Map1E4UniSTS
Whitehead/MRC_RH1686.68UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000162187   ⟹   ENSMUSP00000124251
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1134,313,678 - 134,318,719 (+)Ensembl
GRCm38.p6 Ensembl1134,385,940 - 134,390,981 (+)Ensembl
RefSeq Acc Id: NM_173771   ⟹   NP_776132
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391134,313,678 - 134,318,721 (+)NCBI
GRCm381134,385,940 - 134,390,983 (+)NCBI
MGSCv371136,282,517 - 136,287,560 (+)RGD
Celera1136,998,264 - 137,003,311 (+)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006529559   ⟹   XP_006529622
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391134,313,675 - 134,319,240 (+)NCBI
GRCm381134,385,937 - 134,391,502 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030253997   ⟹   XP_030109857
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391134,313,669 - 134,319,240 (+)NCBI
GRCm381134,385,931 - 134,391,502 (+)NCBI
Sequence:
RefSeq Acc Id: NP_776132   ⟸   NM_173771
- UniProtKB: G3XA12 (UniProtKB/TrEMBL),   Q8C0N4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006529622   ⟸   XM_006529559
- Peptide Label: isoform X1
- UniProtKB: G3XA12 (UniProtKB/TrEMBL),   Q8C0N4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030109857   ⟸   XM_030253997
- Peptide Label: isoform X2
- UniProtKB: Q8C0N4 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSMUSP00000124251   ⟸   ENSMUST00000162187

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-G3XA12-F1-model_v2 AlphaFold G3XA12 1-479 view protein structure

Promoters
RGD ID:6875008
Promoter ID:EPDNEW_M955
Type:single initiation site
Name:4933406M09Rik_1
Description:Mus musculus RIKEN cDNA 4933406M09 gene , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381134,385,940 - 134,386,000EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3045320 AgrOrtholog
Ensembl Genes ENSMUSG00000050526 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000162187 ENTREZGENE
  ENSMUST00000162187.2 UniProtKB/TrEMBL
InterPro Glyco_transf_54 UniProtKB/TrEMBL
KEGG Report mmu:240755 UniProtKB/TrEMBL
MGD MGI:3045320 ENTREZGENE
NCBI Gene 240755 ENTREZGENE
PANTHER Glyco_transf_54 UniProtKB/TrEMBL
  MGAT4 FAMILY, MEMBER F UniProtKB/TrEMBL
Pfam Glyco_transf_54 UniProtKB/TrEMBL
PhenoGen Mgat4f PhenoGen
UniProt G3XA12 ENTREZGENE, UniProtKB/TrEMBL
  Q8C0N4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-09-12 Mgat4f  MGAT4 family, member F  4933406M09Rik  RIKEN cDNA 4933406M09 gene  Symbol and/or name change 5135510 APPROVED