Fam236c (family with sequence similarity 236, member C) - Rat Genome Database

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Gene: Fam236c (family with sequence similarity 236, member C) Mus musculus
Analyze
No known orthologs.
Symbol: Fam236c
Name: family with sequence similarity 236, member C
RGD ID: 1620796
MGI Page MGI
Description: Orthologous to human FAM236A (family with sequence similarity 236 member A) and FAM236B (family with sequence similarity 236 member B).
Type: ncrna (Ensembl: protein-coding)
RefSeq Status: VALIDATED
Previously known as: 1700018G05Rik; hypothetical protein LOC69388
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X101,971,978 - 101,972,713 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX101,971,978 - 101,972,700 (+)EnsemblGRCm39 Ensembl
GRCm38X102,928,372 - 102,929,107 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX102,928,372 - 102,929,094 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X100,122,027 - 100,124,446 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X99,129,407 - 99,131,826 (+)NCBIMGSCv36mm8
CeleraX89,828,035 - 89,828,770 (+)NCBICelera
Cytogenetic MapXDNCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Fam236cMousebiological_process involved_inND 2290270 MGIGO_REF:0000015

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Fam236cMousecellular_component is_active_inND 2290270 MGIGO_REF:0000015

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Fam236cMousemolecular_function enablesND 2290270 MGIGO_REF:0000015

PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073  



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Variants in Fam236c
26 total Variants

1 to 10 of 11 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
4141630Gct6_mgranulosa cell tumorigenesis 6 (mouse)Not determined47179121129764756Mouse
13208552Wght12_mweight 12 (mouse)X94043606149782996Mouse
4141803Lmr30_mleishmaniasis resistance 30 (mouse)Not determined85062606119062720Mouse
1302054Gct4_mgranulosa cell tumorigenesis 4 (mouse)Not determinedX76124336102062720Mouse
13208556Lgth14_mbody length 14 (mouse)X94043606149782996Mouse
13824980Ferq1_mgenetic fertility QTL 1 (mouse)X54045360148782996Mouse
11075102Modc2_mmodifier of Odc2 (mouse)X80189914114190059Mouse
1357500Mdmsc6_mmodifier of muscularity 6 (mouse)Not determinedX75306671109306758Mouse
12879918Shm4_msperm head morphology 4 (mouse)X72072050102062720Mouse
1357433Dbts2_mdiabetes 2 (mouse)Not determinedX7226295150107038Mouse

1 to 10 of 11 rows






Ensembl Acc Id: ENSMUST00000211116   ⟹   ENSMUSP00000147946
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX101,971,978 - 101,972,700 (+)Ensembl
GRCm38.p6 EnsemblX102,928,372 - 102,929,094 (+)Ensembl
RefSeq Acc Id: NR_045422
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X101,971,978 - 101,972,713 (+)NCBI
GRCm38X102,928,372 - 102,929,107 (+)ENTREZGENE
CeleraX89,828,035 - 89,828,770 (+)ENTREZGENE
cM MapX ENTREZGENE
Sequence:
Ensembl Protein ENSMUSP00000147946.2
Ensembl Acc Id: ENSMUSP00000147946   ⟸   ENSMUST00000211116

Name Modeler Protein Id AA Range Protein Structure
AF-A0A1B0GSI2-F1-model_v2 AlphaFold A0A1B0GSI2 1-66 view protein structure



Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000109745 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000211116 ENTREZGENE
  ENSMUST00000211116.2 UniProtKB/TrEMBL
MGD MGI:1916638 ENTREZGENE
NCBI Gene 69388 ENTREZGENE
PhenoGen Fam236c PhenoGen
RNAcentral URS000075C376 RNACentral
UniProt A0A1B0GSI2_MOUSE UniProtKB/TrEMBL


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-04-24 Fam236c  family with sequence similarity 236, member C  1700018G05Rik  RIKEN cDNA 1700018G05 gene  Symbol and/or name updated 27372883 PROVISIONAL