Gm15476 (predicted gene 15476) - Rat Genome Database

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Gene: Gm15476 (predicted gene 15476) Mus musculus
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Symbol: Gm15476
Name: predicted gene 15476
RGD ID: 1620266
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: EG632216
Related Functional Gene: Zfp707  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396136,360,666 - 136,361,915 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6136,360,726 - 136,361,916 (+)EnsemblGRCm39 Ensembl
GRCm386136,383,668 - 136,384,917 (+)ENTREZGENEGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6136,383,728 - 136,384,918 (+)EnsemblGRCm38mm10GRCm38
MGSCv376136,333,891 - 136,334,940 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366136,349,930 - 136,350,709 (+)NCBIMGSCv36mm8
Celera6139,378,567 - 139,379,616 (+)NCBICelera
Cytogenetic Map6G1NCBI
cM Map666.58NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model




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Variants in Gm15476
107 total Variants

Predicted Target Of
Summary Value
Count of predictions:176
Count of miRNA genes:162
Interacting mature miRNAs:174
Transcripts:ENSMUST00000118247
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 39 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
4142079Skmw15_mskeletal muscle weight 15 (mouse)Not determined6116829851149588044Mouse
10043864T2dm4sa_mtype 2 diabetes mellitus 4 in SMXA RI mice (mouse)Not determined683690851146954059Mouse
11252138Clas1_mcarcinogen-induced lung adenoma susceptibility 1 (mouse)6112246918146954059Mouse
10449437Pas15_mpulmonary adenoma susceptibility 15 (mouse)6128180868149588044Mouse
10449436Pas17_mpulmonary adenoma susceptibility 17 (mouse)6124334273145601739Mouse
1300887Pabr1_mplasma apolipoprotein B (human) regulator 1 (mouse)Not determined6103754405136400690Mouse
1301658Radpf3_mradiation pulmonary fibrosis 3 (mouse)Not determined6115219814146330736Mouse
4141940W6q5_mweight 6 weeks QTL 5 (mouse)Not determined96632912146535124Mouse
4140980Mvwf2_mmodifier of von Willebrand factor 2 (mouse)Not determined114345693145601739Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46912919136400690Mouse

1 to 10 of 39 rows





RefSeq Transcripts NG_028611 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC133936 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000118247
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6136,360,726 - 136,361,916 (+)Ensembl
GRCm38.p6 Ensembl6136,383,728 - 136,384,918 (+)Ensembl


Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000083916 Ensembl, ENTREZGENE
MGD MGI:3643813 ENTREZGENE
NCBI Gene 632216 ENTREZGENE
PhenoGen Gm15476 PhenoGen