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Gene: Dubr (Dppa2 upstream binding RNA) Mus musculus

Analyze

Symbol:

Dubr

Name:

Dppa2 upstream binding RNA

RGD ID:

1620017

MGI Page

MGI

Description:

Acts upstream of or within several processes, including generation of neurons; negative regulation of macromolecule biosynthetic process; and protein stabilization. Is active in cytoplasm and nucleus. Is expressed in central nervous system and dorsal root ganglion. Orthologous to human DUBR (DPPA2 upstream binding RNA).

Type:

ncrna (Ensembl: lncRNA)

RefSeq Status:

VALIDATED

Previously known as:

5330426P16Rik; Dum

RGD Orthologs

Human

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	16	50,547,114 - 50,553,136 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	16	50,530,719 - 50,555,103 (-)	Ensembl		GRCm39 Ensembl
GRCm38	16	50,726,751 - 50,732,773 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	16	50,719,294 - 50,732,773 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	16	50,726,864 - 50,732,886 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	16	50,644,973 - 50,760,359 (-)	NCBI		MGSCv36	mm8
Celera	16	51,074,049 - 51,080,080 (-)	NCBI		Celera
Cytogenetic Map	16	B5	NCBI
cM Map	16	31.5	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Familial Prostate Cancer (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

17beta-hydroxy-5alpha-androstan-3-one (ISO)

acrylamide (ISO)

benzo[a]pyrene (EXP,ISO)

benzo[b]fluoranthene (EXP)

beta-lapachone (ISO)

bisphenol A (ISO)

bisphenol F (EXP)

chrysene (EXP)

cisplatin (ISO)

crocidolite asbestos (EXP)

dorsomorphin (ISO)

doxorubicin (ISO)

mercury dibromide (ISO)

methotrexate (ISO)

methylmercury chloride (ISO)

perfluorohexanesulfonic acid (EXP)

phenylmercury acetate (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

sulforaphane (EXP)

tetraphene (EXP)

thimerosal (ISO)

trichostatin A (ISO)

triptonide (EXP)

valproic acid (ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

axonogenesis (IMP)

central nervous system neuron axonogenesis (IMP)

gene expression (IMP)

negative regulation of gene expression via chromosomal CpG island methylation (IMP)

negative regulation of transcription by RNA polymerase II (IMP)

neuron development (IMP)

neuron migration (IMP)

positive regulation of myoblast differentiation (IMP)

protein stabilization (IMP)

translation (IMP)

Cellular Component

cytoplasm (IDA)

nucleus (IDA)

Molecular Function

protein binding (IPI)

protein-containing complex binding (IDA)

References

References - curated

#	Reference Title	Reference Citation
1.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:10349636	PMID:11042159	PMID:11076861	PMID:11217851	PMID:12466851	PMID:16141072	PMID:16141073	PMID:18799693	PMID:21267068	PMID:24316575	PMID:25253739	PMID:25686699
PMID:30186101	PMID:32901860	PMID:33798452	PMID:34321999	PMID:36417851	PMID:37494937

Genomics

Comparative Map Data

Dubr
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	16	50,547,114 - 50,553,136 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	16	50,530,719 - 50,555,103 (-)	Ensembl		GRCm39 Ensembl
GRCm38	16	50,726,751 - 50,732,773 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	16	50,719,294 - 50,732,773 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	16	50,726,864 - 50,732,886 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	16	50,644,973 - 50,760,359 (-)	NCBI		MGSCv36	mm8
Celera	16	51,074,049 - 51,080,080 (-)	NCBI		Celera
Cytogenetic Map	16	B5	NCBI
cM Map	16	31.5	NCBI

DUBR
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	107,240,692 - 107,326,964 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	107,220,744 - 107,462,923 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	3	106,959,539 - 107,045,811 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	108,332,055 - 108,447,045 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	3	105,358,190 - 105,442,153 (+)	NCBI		Celera
Cytogenetic Map	3	q13.12	NCBI
HuRef	3	104,334,237 - 104,419,155 (+)	NCBI		HuRef
CHM1_1	3	106,923,896 - 107,010,140 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	3	109,960,376 - 110,046,666 (+)	NCBI		T2T-CHM13v2.0

Variants

Variants in Dubr
164 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	85
Count of miRNA genes:	82
Interacting mature miRNAs:	83
Transcripts:	ENSMUST00000169791
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
11059560	Lmr12b_m	leishmaniasis resistance 12b (mouse)					16	28792813	62792952	Mouse
1300915	Lmr12_m	leishmaniasis resistance 12 (mouse)			Not determined		16	28792813	62792952	Mouse
1301138	Pcd4ts3_m	p-glycoprotein positive CD4 T cell subset 3 (mouse)			Not determined		16	40593923	74594076	Mouse
26884376	Skwq4_m	skull length QTL 4, 5 week (mouse)					16	8417864	90896888	Mouse
1302096	Aod1a_m	autoimmune ovarian dysgenesis 1a (mouse)			Not determined		16	35446643	92573008	Mouse
4141212	Imraq3_m	immune response to AAV2 QTL 3 (mouse)			Not determined		16	44383350	78383506	Mouse
1558836	Dice1b_m	determination of interleukin 4 commitment 1b (mouse)			Not determined		16	45511000	72274485	Mouse
4141179	Ipng3_m	imprinted postnatal growth 3 (mouse)			Not determined			22775252	57594076	Mouse
1301719	Remslp3_m	rapid eye movement sleep 3 (mouse)			Not determined		16	44383350	78383506	Mouse
1300534	Bmd15_m	bone mineral density 15 (mouse)			Not determined		16	21938383	55938574	Mouse
1357778	Diobq_m	diet-induced obesity QTL (mouse)			Not determined		16	42197817	82331174	Mouse
26884432	Zlq7_m	zygomatic length QTL 7, 10 week (mouse)					16	3817864	64620363	Mouse
11049571	Lmr12c_m	leishmaniasis resistance 12c (mouse)					16	28792813	62792952	Mouse
27226768	Tibl9_m	tibia length 9, 5 week (mouse)					16	3317864	51420363	Mouse
11059559	Lmr12a_m	leishmaniasis resistance 12a (mouse)					16	28792813	62792952	Mouse
4142187	Arrd3_m	age-related retinal degeneration 3 (mouse)			Not determined			32522909	65466552	Mouse
11522747	Eae41_m	experimental allergic encephalomyelitis susceptibility 41 (mouse)					16	40399134	78015472	Mouse
14928310	Manh80_m	mandible shape 80 (mouse)					16	48219841	82219841	Mouse
1357763	Lp1_m	lymphocyte proliferation 1 (mouse)			Not determined		16	6542979	65466552	Mouse
1357517	Bwtn1_m	body weight at necropsy 1 (mouse)			Not determined		16	20019329	85600826	Mouse
26884416	Bzwq5_m	bi-zygomatic width QTL 5, 5 week (mouse)					16	37320362	84696888	Mouse
1301070	Cypr1_m	cytokine production 1 (mouse)			Not determined		16	32312795	66312933	Mouse
27226785	Feml12_m	femur length 12, 5 week (mouse)					16	3317864	64620363	Mouse
4142112	Skts-fp3_m	skin tumor susceptibility in FVB and PWK 3 (mouse)			Not determined		16	40053881	72924385	Mouse

Markers in Region

UniSTS:237521

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	16	50,726,767 - 50,726,900	UniSTS	GRCm38
MGSCv37	16	50,726,880 - 50,727,013	UniSTS	GRCm37
Celera	16	51,074,065 - 51,074,198	UniSTS
Cytogenetic Map	16	B5	UniSTS

px-31f3

Mouse Assembly	Chr	Position (strand)	Source
Cytogenetic Map	11	B5	UniSTS
Cytogenetic Map	7	A1	UniSTS
Cytogenetic Map	16	C3.3	UniSTS
Cytogenetic Map	10	A4	UniSTS
Cytogenetic Map	10	A3-A4	UniSTS
Cytogenetic Map	18	B3	UniSTS
Cytogenetic Map	7	C	UniSTS
Cytogenetic Map	9	E3.1	UniSTS
Cytogenetic Map	10	A1	UniSTS
Cytogenetic Map	17	C	UniSTS
Cytogenetic Map	15	F1	UniSTS
Cytogenetic Map	7	F3	UniSTS
Cytogenetic Map	16	B5	UniSTS
Cytogenetic Map	15	D3	UniSTS
Cytogenetic Map	7	F1	UniSTS
Cytogenetic Map	10	C3	UniSTS
Cytogenetic Map	3	F1	UniSTS
Cytogenetic Map	14	B	UniSTS
Cytogenetic Map	5	C3.1	UniSTS
Cytogenetic Map	10	B5.1	UniSTS
Cytogenetic Map	18	E4	UniSTS
Cytogenetic Map	1	A2	UniSTS
Cytogenetic Map	18	D1	UniSTS
Cytogenetic Map	8	A2	UniSTS
Cytogenetic Map	5	A3	UniSTS
Cytogenetic Map	2	A3	UniSTS
Cytogenetic Map	14	D2	UniSTS
Cytogenetic Map	3	F2.2	UniSTS
Cytogenetic Map	13	C1	UniSTS
Cytogenetic Map	5	G2	UniSTS
Cytogenetic Map	10	C1	UniSTS
Cytogenetic Map	11	C	UniSTS
Cytogenetic Map	17	B3	UniSTS
Cytogenetic Map	12	C2	UniSTS
Cytogenetic Map	13	B2	UniSTS
Cytogenetic Map	15	A1	UniSTS
Cytogenetic Map	11	E1	UniSTS
Cytogenetic Map	5	B1	UniSTS
Cytogenetic Map	10	D1	UniSTS
Cytogenetic Map	13	D1	UniSTS
Cytogenetic Map	4	C3	UniSTS
Cytogenetic Map	X	D	UniSTS
Cytogenetic Map	18	D3	UniSTS
cM Map	10	60.0	UniSTS
cM Map	15	4.6	UniSTS
cM Map	4	39.4	UniSTS
cM Map	11	70.0	UniSTS
cM Map	13	36.0	UniSTS
cM Map	5	18.2	UniSTS
cM Map	12	29.0	UniSTS
cM Map	X	42.0	UniSTS
cM Map	13	47.01	UniSTS

px-38e3

Mouse Assembly	Chr	Position (strand)	Source
Cytogenetic Map	4	D1	UniSTS
Cytogenetic Map	18	B3	UniSTS
Cytogenetic Map	18	D3	UniSTS
Cytogenetic Map	5	B3	UniSTS
Cytogenetic Map	17	B3	UniSTS
Cytogenetic Map	4	C7	UniSTS
Cytogenetic Map	13	C1	UniSTS
Cytogenetic Map	16	B5	UniSTS
Cytogenetic Map	4	D2.3	UniSTS
Cytogenetic Map	8	B3.3	UniSTS
Cytogenetic Map	1	H4	UniSTS
Cytogenetic Map	7	F2	UniSTS
Cytogenetic Map	10	D2	UniSTS
Cytogenetic Map	2	G3	UniSTS
Cytogenetic Map	14	B	UniSTS
Cytogenetic Map	11	B5	UniSTS
Cytogenetic Map	Y	A1	UniSTS
Cytogenetic Map	11	A3.2	UniSTS
Cytogenetic Map	3	A1	UniSTS
Cytogenetic Map	13	C3	UniSTS
Cytogenetic Map	1	H6	UniSTS
Cytogenetic Map	5	B2	UniSTS
Cytogenetic Map	19	C3	UniSTS
Cytogenetic Map	10	D1	UniSTS
Cytogenetic Map	10	A1	UniSTS
cM Map	10	60.0	UniSTS
cM Map	1	106.6	UniSTS
cM Map	19	36.5	UniSTS
cM Map	5	20.0	UniSTS
cM Map	13	40.0	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	NR_028300	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC154359	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC159317	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK003970	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK019912	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK035047	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK040285	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK052569	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK151508	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CJ061177	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSMUST00000169791

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	16	50,546,828 - 50,553,142 (-)	Ensembl
GRCm38.p6 Ensembl	16	50,727,436 - 50,732,688 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000186535

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	16	50,545,793 - 50,553,166 (-)	Ensembl
GRCm38.p6 Ensembl	16	50,725,625 - 50,732,728 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000186806

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	16	50,545,793 - 50,553,143 (-)	Ensembl
GRCm38.p6 Ensembl	16	50,726,751 - 50,732,737 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000186944

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	16	50,539,657 - 50,553,138 (-)	Ensembl
GRCm38.p6 Ensembl	16	50,719,294 - 50,732,773 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000191079

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	16	50,539,662 - 50,553,046 (-)	Ensembl
GRCm38.p6 Ensembl	16	50,719,299 - 50,732,683 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000241647

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	16	50,547,798 - 50,553,125 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000242044

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	16	50,550,182 - 50,553,279 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000243162

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	16	50,539,655 - 50,553,178 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000243192

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	16	50,551,759 - 50,553,100 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000243362

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	16	50,530,719 - 50,553,166 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000243372

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	16	50,547,804 - 50,553,091 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000246984

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	16	50,539,659 - 50,553,117 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000301344

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	16	50,530,727 - 50,553,164 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000301345

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	16	50,530,729 - 50,553,151 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000301346

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	16	50,530,731 - 50,553,096 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000301347

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	16	50,530,729 - 50,553,080 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000301348

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	16	50,530,729 - 50,553,051 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000301349

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	16	50,539,657 - 50,553,114 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000301350

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	16	50,539,659 - 50,553,089 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000301351

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	16	50,547,111 - 50,553,109 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000301352

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	16	50,548,185 - 50,553,106 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000301353

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	16	50,548,321 - 50,553,051 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000301354

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	16	50,552,866 - 50,555,103 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000301355

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	16	50,551,665 - 50,553,444 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000301356

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	16	50,551,757 - 50,553,106 (-)	Ensembl

RefSeq Acc Id:

NR_028300

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	16	50,547,114 - 50,553,136 (-)	NCBI
GRCm38	16	50,726,751 - 50,732,773 (-)	ENTREZGENE
MGSCv37	16	50,726,864 - 50,732,886 (-)	RGD
Celera	16	51,074,049 - 51,080,080 (-)	RGD
cM Map	16		ENTREZGENE

Sequence:

show sequence

GGACCGGCACCGCGCGTGCGTAGAGCTGTCAGCCGCACCCAGGCCGCGCTTCTAGCAAAGTTGC
AAAGCAACGGGCAGACCTGTCAGAACGGTGAAGATCCCGGCGATGGAAAAAAGGCGAAACTGCT
CCGCGTAGGCTGCTCGGAGTGGCATCGCACCTTGTTCGAGTCCGAAGAAGTTCCCGCTTCTCTA
AGCCGGCTGAAGGGATGCGAGTCTCCTCTTGTCCCAACGGGACTGTGTCCTGACACAGAGTGGA
CTCCGCCCCAAGAGTGCGAGCGTCCTGAGCGTTCAGGGCATCCTGAGCCGCGGAAGGCATCCGG
CCACACCCCGCTCTTTACCCGCCAACGCCAGCCCAGGTGGCCAGGCTCAGAATGGACTGTGAGC
CTGTGTGTTATGCATCTCTGGTTGTAGAGACAAAAGGACAAAGATGGAACCCACCAAGGATGCT
CCCGGCTGAATGAATTGTTGTTCTCTGGCTTACACAAAGTCAAGCGAATGATCGTCCCATGTTA
TGTAATATAGCAACGGCCTGCTTACCTTACTCCTTTAATCTACGTTATTCTGGAAAGTAACACT
TGAAATAAAAAGTAGATACATTCTACTGGGAATGTGACCCTCAGAGAAGGAAAGAAAGACCGAG
GGGTTGAACCTGAACACGTGAAAGAGAATCCAAGGTAATTGGGGAAGCATTGTCAAGAGCTCAC
TAGCTATTTAAGAAAAAAGCATCCCATGTATCTTAATAAATTTTGTCTGATTGATGGCTTTTTG
ATGGGCCAGAGAGGAGTGAGAGAGAGCCAGAGAGACACAGAGACAGGCAGACAGACAGCAAGGA
GGAGTTTTCTTCTCTATCAGCAGCTATCTCTGTGTGAGGGTTTCTCCCTTCAAATGTCAATTCT
GCCATCCCTGTAGGGAACCTGCTTGGTACTGCCACATCAGAGAAGCCTCGGGTAAGGAGACTGG
ATGCTTGGAATCATGGATACTCAGAGCACTGTTAACAAAGAGCAGAGTCCAGTCTTCCAGAGTC
ATGACCTGAATCCAAAGTTGAAAAGATCTGAGCAGTGTATAAACAGCCTGTCATAACCTGCATA
ATACATTTTTAGTCCTGAATAAATCTATTCACACTTCTTTCTATAATCATACTTATGTAGATAA
GGTTGGCAGGAGGAAGGTGAAGTATATTTGAAGGTATATGTTTATAACAGCTTTAACCTCAAGT
CATGTTTATTTATAAGAGAAAACGACAGTGGAATTTGGAAAATTAAGAAATGATTCTTACCAGA
CAGTGGTGGCACACACCTTGAATCCAGCACTTGGGAGATGGAGGCAGGTAGTTCTCCAATTTTG
AGGACAGTCCAGTCTACAGAGTGCGTCAGAGGACAATCACAGGACCACGTAGAGGAATTTTATC
TCGAAAGATTGAAAAAGTAAAGCCTGATTCTACTCAAAATGTTTGAGCAGTAGGGAGAGTGTCA
GATATCTGGTCTCACACAGTCTCATGAACAGCTGCTTTGGGGGAAGGGCCGAAGGAAGAAAACT
CTCGTGTGAGCTTTATAAATTCTCGCCATAGACTTTCCCTAAGAGACTCTTTCCTGTTCTCGTG
ATGCACTAATGACAGAAATCATATGACTAATGGAGAGAAACTGGTAGATATACAAGAAGAACTG
CATTGGGATAACCGCCATCTTACAAAGGGTCAGTGTTAACATTTGTCAATGTATCCTGTGATGA
GTCATTCAACTTGGTACATGTTGAGTTCTATAGAGTACATGACACTCTTATGCCTGTGAGCAAG
CCATAATGTAAAATAATTCATCC

hide sequence

Promoters

RGD ID:

8686354

Promoter ID:

EPDNEW_M21207

Type:

initiation region

Name:

Dubr_2

Description:

Mus musculus Dppa2 upstream binding RNA , long non-coding RNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_M21208

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	16	50,722,879 - 50,722,939	EPDNEW

RGD ID:

6826786

Promoter ID:

MM_KWN:21206

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day0, 3T3L1_Day1, 3T3L1_Day2, 3T3L1_Day3, 3T3L1_Day4, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, ES_Cell, Kidney, Liver, Lung, MEF_B4, MEF_B6, Spleen

Transcripts:

AK035047_5330426P16RIK, UC007ZKY.1, UC007ZKZ.1

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	16	50,732,636 - 50,733,136 (-)	MPROMDB

RGD ID:

15094702

Promoter ID:

EPDNEWNC_M2605

Type:

initiation region

Name:

Dubr_1

Description:

Dppa2 upstream binding RNA [Source:MGISymbol;Acc:MGI:1915440]

SO ACC ID:

SO:0000170

Source:

EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	16	50,732,728 - 50,732,788	EPDNEWNC

RGD ID:

8686356

Promoter ID:

EPDNEW_M21208

Type:

initiation region

Name:

Dubr_1

Description:

Mus musculus Dppa2 upstream binding RNA , long non-coding RNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_M21207

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	16	50,732,737 - 50,732,797	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:1915440	AgrOrtholog
Ensembl Genes	ENSMUSG00000022639	Ensembl
MGD	MGI:1915440	ENTREZGENE
NCBI Gene	68190	ENTREZGENE
PhenoGen	Dubr	PhenoGen
RNAcentral	URS000075D69E	RNACentral
UniProt	Q3UVR5_MOUSE	UniProtKB/TrEMBL
	Q8BR36_MOUSE	UniProtKB/TrEMBL
	Q8BT49_MOUSE	UniProtKB/TrEMBL
	Q8C744_MOUSE	UniProtKB/TrEMBL
	Q9CTC3_MOUSE	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-09-29	Dubr	Dppa2 upstream binding RNA	5330426P16Rik	RIKEN cDNA 5330426P16 gene	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD