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Gene: Zfp872 (zinc finger protein 872) Mus musculus

Analyze

Symbol:

Zfp872

Name:

zinc finger protein 872

RGD ID:

1619573

MGI Page

MGI

Description:

Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZNF709 (zinc finger protein 709).

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

9530015I07Rik; zinc finger protein 564

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	22,099,462 - 22,113,419 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	22,099,386 - 22,113,419 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	9	22,188,166 - 22,202,123 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	22,188,090 - 22,202,123 (+)	Ensembl		GRCm38.p6 Ensembl	mm10	GRCm38
MGSCv37	9	21,992,610 - 22,006,567 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	9	21,938,568 - 21,952,525 (+)	NCBI		MGSCv36	mm8
Celera	9	19,457,987 - 19,472,477 (+)	NCBI		Celera
Cytogenetic Map	9	A3	NCBI
cM Map	9	8.57	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

cholangiocarcinoma (ISO)

ovarian serous cystadenocarcinoma (ISO)

thymoma (ISO)

urinary bladder cancer (ISO)

uterine carcinosarcoma (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

2,3,7,8-tetrachlorodibenzodioxine (EXP)

acrylamide (ISO)

aldehydo-D-glucose (EXP)

aristolochic acid A (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

cadmium atom (ISO)

D-glucose (EXP)

dorsomorphin (ISO)

folic acid (EXP)

formaldehyde (ISO)

fructose (EXP)

glucose (EXP)

glyphosate (EXP)

methylmercury chloride (ISO)

O-methyleugenol (ISO)

paracetamol (ISO)

perfluorohexanesulfonic acid (EXP)

phenylmercury acetate (ISO)

propanal (ISO)

SB 431542 (ISO)

sodium arsenite (EXP)

sunitinib (ISO)

titanium dioxide (EXP)

trichostatin A (ISO)

valproic acid (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:10349636	PMID:11042159	PMID:11076861	PMID:11217851	PMID:12466851	PMID:12477932	PMID:16141072	PMID:16141073	PMID:21873635

Genomics

Comparative Map Data

Zfp872
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	22,099,462 - 22,113,419 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	22,099,386 - 22,113,419 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	9	22,188,166 - 22,202,123 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	22,188,090 - 22,202,123 (+)	Ensembl		GRCm38.p6 Ensembl	mm10	GRCm38
MGSCv37	9	21,992,610 - 22,006,567 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	9	21,938,568 - 21,952,525 (+)	NCBI		MGSCv36	mm8
Celera	9	19,457,987 - 19,472,477 (+)	NCBI		Celera
Cytogenetic Map	9	A3	NCBI
cM Map	9	8.57	NCBI

ZNF709
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	12,461,184 - 12,484,816 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	12,461,184 - 12,513,854 (-)	Ensembl		GRCh38.p14 Ensembl	hg38	GRCh38
GRCh37	19	12,571,998 - 12,595,630 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	12,435,743 - 12,456,632 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	19	12,465,820 - 12,489,452 (-)	NCBI		Celera
Cytogenetic Map	19	p13.2	NCBI
HuRef	19	12,145,183 - 12,168,524 (-)	NCBI		HuRef
CHM1_1	19	12,571,913 - 12,595,533 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	19	12,589,588 - 12,613,220 (-)	NCBI		T2T-CHM13v2.0

Znf709l
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	28,986,472 - 28,997,594 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	8	28,975,836 - 28,997,592 (+)	Ensembl				GRCr8
mRatBN7.2	8	20,710,114 - 20,721,236 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	20,710,461 - 20,720,246 (+)	Ensembl				mRatBN7.2
Dahl_SR_JrHsd	8	28,992,306 - 29,002,095 (+)	NCBI
Lyon_Normotensive	8	31,168,045 - 31,177,833 (+)	NCBI
Lyon_Hypertensive	8	29,743,468 - 29,753,259 (+)	NCBI
F344_StmMcwi	8	21,083,977 - 21,093,766 (+)	NCBI
Rnor_6.0	8	23,176,910 - 23,197,896 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	23,193,181 - 23,197,319 (+)	Ensembl		Rnor_6.0 Ensembl	rn6	Rnor6.0
Rnor_5.0	8	23,241,604 - 23,250,639 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
Celera	8	22,084,825 - 22,108,090 (+)	NCBI		Celera
Cytogenetic Map	8	q13	NCBI

ZNF709
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	17,393,562 - 17,443,377 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	16,395,134 - 16,444,003 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	12,026,842 - 12,076,648 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	12,776,817 - 12,797,325 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2

LOC100682654
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	49,614,418 - 49,647,119 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	49,437,519 - 49,521,050 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	50,083,055 - 50,166,581 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
UMICH_Zoey_3.1	20	49,294,219 - 49,377,572 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	49,721,762 - 49,804,784 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	49,963,112 - 50,046,278 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

LOC102167305
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	2	66,564,563 - 66,576,448 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	66,920,355 - 66,925,024 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ZNF709
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mChlSab1.0.hap1	6	50,340,810 - 50,361,412 (+)	NCBI		mChlSab1.0.hap1
Vero_WHO_p1.0	NW_023666074	8,589,747 - 8,609,072 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0
ChlSab1.1	6	11,196,988 - 11,213,575 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2

Variants

Variants in Zfp872
1218 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	554
Count of miRNA genes:	359
Interacting mature miRNAs:	398
Transcripts:	ENSMUST00000091508, ENSMUST00000178901
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
35673312	Ari7_m	antibody response to influenza 7, day 45, IgG3 (mouse)					9	7800001	22211296	Mouse
13504834	Hdlq109_m	HDL QTL 109 (mouse)					9	16709641	50709641	Mouse
1357465	Vtbt6_m	vertebral trabecular bone trait 6 (mouse)			Not determined		9	16978840	50978943	Mouse
13504833	Bglu19_m	blood glucose level 19 (mouse)					9	9910768	43910768	Mouse
1357637	Si5lq2_m	serum IGFBP-5 level QTL 2 (mouse)			Not determined		9	15411751	49411890	Mouse
12790993	Adq1_m	aortic diameter QTL 1 (mouse)					9	15749627	49749627	Mouse
10043917	Obq37_m	obesity QTL 37 (mouse)			Not determined		9	13391175	47391175	Mouse
12790997	Adq2_m	aortic diameter QTL 2 (mouse)					9	15749627	49749627	Mouse
12880415	V125Dq7_m	vitamin D active form serum level QTL 7 (mouse)					9	16011296	50011296	Mouse
1300849	Sles4_m	systemic lupus erythmatosus suppressor 4 (mouse)			Not determined		9	9107562	37306370	Mouse
12880416	V125Dq8_m	vitamin D active form serum level QTL 8 (mouse)					9	16011296	50011296	Mouse
13434920	Dcollq1_m	differential colonization level QTL 1 (mouse)					9	1	30341840	Mouse
1301045	Sluc10_m	susceptibility to lung cancer 10 (mouse)			Not determined		9	20306197	54306370	Mouse
1300532	Tbs2_m	tuberculosis severity 2 (mouse)			Not determined		9	12369970	46370114	Mouse
4141591	Cq4_m	cholesterol QTL 4 (mouse)			Not determined		9	15411751	49411890	Mouse
1301883	Skull12_m	skull morphology 12 (mouse)			Not determined		9	20306197	54306370	Mouse
11354951	Pdcc3_m	plasmacytoid dentritic cell compartment 3 (mouse)					9	15749627	49749627	Mouse
1301439	Morph2_m	morphine antinociception 2 (mouse)			Not determined		9	20153362	54153492	Mouse
4142352	Lmr17_m	leishmaniasis resistance 17 (mouse)			Not determined		9	20306197	54306370	Mouse
12904939	Edlmmq8_m	extensor digitorum longus muscle mass QTL 8 (mouse)					9	20852740	54852740	Mouse
1300899	Chol6_m	cholesterol 6 (mouse)			Not determined		9	1	29902913	Mouse
1300643	Pvcan2_m	protection against vaginal candidiasis 2 (mouse)			Not determined		9	19943406	53943525	Mouse
10043950	Pbft5_m	percent body fat 5 (mouse)			Not determined		9	20306197	54306370	Mouse
4141447	Cfmq2_m	cystic fibrosis modifier QTL 2 (mouse)			Not determined		9	15411751	49411890	Mouse
1301421	Lgth4_m	body length 4 (mouse)			Not determined		9	15411751	49411890	Mouse

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001033813	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC159308	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK137156	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC150971	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC151175	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466522	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSMUST00000091508 ⟹ ENSMUSP00000089089

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	9	22,108,363 - 22,111,920 (+)	Ensembl
GRCm38.p6 Ensembl	9	22,197,067 - 22,200,624 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000178901 ⟹ ENSMUSP00000136074

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	9	22,099,434 - 22,113,419 (+)	Ensembl
GRCm38.p6 Ensembl	9	22,188,168 - 22,202,123 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000217301 ⟹ ENSMUSP00000149642

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	9	22,099,386 - 22,111,088 (+)	Ensembl
GRCm38.p6 Ensembl	9	22,188,090 - 22,199,792 (+)	Ensembl

RefSeq Acc Id:

NM_001033813 ⟹ NP_001028985

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	9	22,099,462 - 22,113,419 (+)	NCBI
GRCm38	9	22,188,166 - 22,202,123 (+)	ENTREZGENE
MGSCv37	9	21,992,610 - 22,006,567 (+)	RGD
Celera	9	19,457,987 - 19,472,477 (+)	RGD
cM Map	9		ENTREZGENE

Sequence:

show sequence

TATTTCAGGCAGGTTCTCTGGGGTGTCAGCCACGGAGGCGGGAGCCTGGGAGGACGCGGGGAAA
TGGACTCAGTGGCTTTTGAGGATGTAGCTGTGAACTTCACCCATGAGGAGTGGGCTCTGCTGGA
CGATTCTCAGAAGGAACTGTACCAAGATGTGATGCAGGAAACCGTTGATAACCTGGCTTCTATT
GGGGAAAATTGGCAAGACCAGAGCATTAGGGATCAGTGCAAAACTCAGGGAAAATACATAAGTG
CTCATGTAGAACAGAGACCCCGCGAATGGAAAAGTGCATGCAGGGAAGTCTTCACCCAGCTTCC
AGCTCTTAAACAGCAGCATATTCTCCCTGGAGTAAAGCCCTGTGAATGCGGTATATGTGGAAAA
GTTTACTCCTGTCGTTCCTCTCTTAAGAGGCACATGCAGTGTCATAGTGAGCACACACAGTGGG
AGAGTCACGGATTCAGAGGGAAGTTATACCAGTGTAAGGACTGTGGGAAAGCATTCAGCTTTCA
AAGTTCATTTAGAATACATGAGAGGACTCACACTGGAGAGAAGCCCTACATGTGTAAGGAATGT
GGCAAAGCCTTCATTTATCACACCACTTATCAAGGACACATGAGGATGCACACAGGAGAAAAAC
CCTATAAATGTAAGGAGTGTGGGAAGGCTTTCAGCCACCCCAGCTTGTTTCGAAACCACGAACG
AGCTCACTCTGGAGAGAAACCCTATGAGTGTAAGCAGTGTGGGAAGACCTTCAGATATTACCAA
ACCTTTCAGTTACATGAGAGGACTCACACTGGAGAGAAGCCTTACCAGTGTAAGCAGTGTGGGA
AAGCTCTCAGTCGCTCCACATCTTTTCGAAGTCACGAGAGGATCCACACTGGAGAAAAACCATA
TAAATGTAGAAAATGTGGCAAAGCCTTTAGATTCCCCAGTTCCTTTCGCAAACATGAAAGAATT
CACACTGACGAGAGGCCTTATGATTGTAAGGAGTGTGGGAAAGCCTTCATTTCTCTCCCAAGCT
TTCGAAGGCATGTGATATTGCACACTGGAAACGGGCCTTACAAATGTAAAGAGTGTGGGAAAGC
CTTCGATTGTCCCAGCTCATTTCACATTCATGAGCGAACACACACTGGAGAGAAGCCCCACGAG
TGTCAGCGGTGCGGGAAGGCCTTCAGCTGCGCCAGTTCTGTTCGAATTCATGAGAGGACTCACA
CGGGAGAGAAGCCCTATGAGTGTAAGCAGTGTGGGAAGGCCTTTAGTTCCTCTAGCTCCTTTCG
CATGCATGAACGAATTCACACTGGAGAGAAACCCTATGAATGTAGGCAGTGTGGGAAGGCCTTT
AGCTTCTCTAGCTCCTTTCGCATGCATGAGAGGACTCACAAGGGAGAGAAGCCCTATGAATGTA
AGCAGTGTGGGAAGGCCTTTAGTTCCTCTAGCTCCTTTCACATGCATGGATGAATTCACACTGG
AGAGAAACCGTATGAATGTAAGCAGTATGGGAAGGCTTTCAGCTGCTCCAGTTCTGTCCGAATT
CATGAGAGGACTCACTCGGGAGAGAAACCCTATGAGTGTCAGCAGTGCCACAAGGCCTTCAGTT
GCTCTCATTCTTTCCGGATCCATGAAAGGACTCACACTGGAGAGAAGCCCTATGAATGTCAGCA
GTGTGGGAAGGCCTTCAGATGTTCTCGCTCCTTCAGAATACATGGAAGAACTCATAATGGGCAA
TGATCCTTTAAATGTAAGTCATGTGGTAAAGCCTTCCATTGTCCCACTGCCCTTTGAAGATACT
CTCTTGCTTAGAGAAATACTGTGAACAAAATAGAACTGGAAAACCTCTCATTTCTCTAGTTGTG
AATCCCAGAAAAAAAAAAACCCTATGTGTCTATGTGATGGGAAAACCTTCAGTGGATATGCAAC
TTCATAAGGCCACATAGATACACAGGGGAAAATAAACCCCATACATTAGGTAGTGTATAAAAGT
CCTCAGTTGCTCAGTTATCTGGAAACCACAAACTTGTATTACAGGATAGCTTGATGAATGCAAG
CATTGTGGGAAACCATCAGTACTCTGCGCCTTCCAAACATGTGAAGAGGACCCTTAAGAAGTGA
AAAGTAATGATTAATTTCCTATCTTATTGAATATTTACATGATACTTATTTGAGAAATTGTGAA
TTTATGAAGATAACCACTGGAAAGGAATTCTGTAAGTGTGGACAATATGAGGAAGTTCCATGTA
AGTTTGTATATGTATATTTTTGAAAAGTCATAAAATGAAAGAAAGGGAGTTTTCTTTTGTCATA
TGCTCATTCTTTTTTTTTTTTAAAGATTTATTTATTTAACTATGAGTACACTGTCACTGTCTTC
AGACCCACCAGAAGAGGGCATCCAAATCCATTACAGATGGTTTAGAGCCACCATGTGGTTGCTG
GGAATTGAACTCAGGACCTCTGGAAGAAGAGTCGGTGCTCTTAACCACTGAGCCGTCTCTCCAG
CCCCCATATGCTCATTCTTAAAACTGTGACTCTGGACTATAGATTTTTGTTACTTTTGCTTATA
TGAGCATTGAGGTTAGATTATTCTGAAAGTCATCATTAAATAATGGTACATAAATTTAATAAGT
ACTGGGTTGGTTGGTTTTTTGGGCAGTTACTATATTTTTAAAGATTTATTTACTTTGTGTATAT
GAGTACACTGTAGCTGTCTTCAGACACCCGAAAAGTTTTTTTCTAGTGATTTCTTAGAAGCACT
TCATTAACTATTCCCAGATAATCTGTACTAACTCAAGTATTATTTTCCCTTTTCTTTAAGGATA
TACTAAATTTCCTCATTGCAATTACACATTTTCAGATTACAATTGTTTCAGGTTAAGCAATATT
ATTGTGTTTAAACATTGGGTTTTACTACTGTTTACTTGTGTTACTTTTCATAAAACTAATTAAA
TTTTATTACGTTTACT

hide sequence

Protein Sequences


Protein RefSeqs	NP_001028985	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI50972	(Get FASTA)	NCBI Sequence Viewer
	AAI51176	(Get FASTA)	NCBI Sequence Viewer
	BAE23256	(Get FASTA)	NCBI Sequence Viewer
	EDL25263	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSMUSP00000089089.5
	ENSMUSP00000136074
	ENSMUSP00000136074.2
	ENSMUSP00000149642.2

RefSeq Acc Id:

NP_001028985 ⟸ NM_001033813

- UniProtKB:

Q3UVL3 (UniProtKB/TrEMBL), J3QJW1 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MDSVAFEDVAVNFTHEEWALLDDSQKELYQDVMQETVDNLASIGENWQDQSIRDQCKTQGKYIS
AHVEQRPREWKSACREVFTQLPALKQQHILPGVKPCECGICGKVYSCRSSLKRHMQCHSEHTQW
ESHGFRGKLYQCKDCGKAFSFQSSFRIHERTHTGEKPYMCKECGKAFIYHTTYQGHMRMHTGEK
PYKCKECGKAFSHPSLFRNHERAHSGEKPYECKQCGKTFRYYQTFQLHERTHTGEKPYQCKQCG
KALSRSTSFRSHERIHTGEKPYKCRKCGKAFRFPSSFRKHERIHTDERPYDCKECGKAFISLPS
FRRHVILHTGNGPYKCKECGKAFDCPSSFHIHERTHTGEKPHECQRCGKAFSCASSVRIHERTH
TGEKPYECKQCGKAFSSSSSFRMHERIHTGEKPYECRQCGKAFSFSSSFRMHERTHKGEKPYEC
KQCGKAFSSSSSFHMHG

hide sequence

Ensembl Acc Id:

ENSMUSP00000089089 ⟸ ENSMUST00000091508

Ensembl Acc Id:

ENSMUSP00000136074 ⟸ ENSMUST00000178901

Ensembl Acc Id:

ENSMUSP00000149642 ⟸ ENSMUST00000217301

Protein Domains

C2H2-type KRAB

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q3UVL3-F1-model_v2	AlphaFold	Q3UVL3	1-465	view protein structure

Promoters

RGD ID:

6845366

Promoter ID:

MM_KWN:56618

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

ES_Cell, Liver

Transcripts:

NM_001033813

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	9	21,992,391 - 21,992,891 (+)	MPROMDB

RGD ID:

8669028

Promoter ID:

EPDNEW_M12544

Type:

multiple initiation site

Name:

Zfp872_1

Description:

Mus musculus zinc finger protein 872 , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	9	22,188,236 - 22,188,296	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:3588272	AgrOrtholog
Ensembl Genes	ENSMUSG00000074472	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSMUST00000091508.5	UniProtKB/TrEMBL
	ENSMUST00000178901	ENTREZGENE
	ENSMUST00000178901.8	UniProtKB/TrEMBL
	ENSMUST00000217301.2	UniProtKB/TrEMBL
Gene3D-CATH	6.10.140.140	UniProtKB/TrEMBL
	Classic Zinc Finger	UniProtKB/TrEMBL
InterPro	C2H2-ZF_domain	UniProtKB/TrEMBL
	KRAB_dom_sf	UniProtKB/TrEMBL
	Krueppel-associated_box	UniProtKB/TrEMBL
	Znf_C2H2-type	UniProtKB/TrEMBL
	Znf_C2H2/integrase_DNA-bd	UniProtKB/TrEMBL
	Znf_C2H2_sf	UniProtKB/TrEMBL
KEGG Report	mmu:619310	UniProtKB/TrEMBL
MGD	MGI:3588272	ENTREZGENE
NCBI Gene	619310	ENTREZGENE
PANTHER	FINGER PUTATIVE TRANSCRIPTION FACTOR FAMILY-RELATED	UniProtKB/TrEMBL
	GENE 10130-RELATED	UniProtKB/TrEMBL
	ZINC FINGER PROTEIN	UniProtKB/TrEMBL
	ZINC FINGER PROTEIN 771	UniProtKB/TrEMBL
	ZINC FINGER PROTEIN 977	UniProtKB/TrEMBL
	ZNF44 PROTEIN	UniProtKB/TrEMBL
Pfam	KRAB	UniProtKB/TrEMBL
	zf-C2H2	UniProtKB/TrEMBL
PhenoGen	Zfp872	PhenoGen
PROSITE	KRAB	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_1	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_2	UniProtKB/TrEMBL
SMART	KRAB	UniProtKB/TrEMBL
	ZnF_C2H2	UniProtKB/TrEMBL
Superfamily-SCOP	Krueppel-associated_box	UniProtKB/TrEMBL
	SSF57667	UniProtKB/TrEMBL
UniProt	A0A1L1SRW1_MOUSE	UniProtKB/TrEMBL
	F7APL9_MOUSE	UniProtKB/TrEMBL
	J3QJW1	ENTREZGENE, UniProtKB/TrEMBL
	Q3UVL3	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar