Gm7954 (predicted gene 7954) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Gm7954 (predicted gene 7954) Mus musculus
Analyze
No known orthologs.
Symbol: Gm7954
Name: predicted gene 7954
RGD ID: 1619404
MGI Page MGI
Description:
Type: protein-coding (Ensembl: unprocessed_pseudogene)
RefSeq Status: VALIDATED
Previously known as: EG666156; uncharacterized protein LOC102635067
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391441,170,154 - 41,175,513 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1441,170,922 - 41,175,465 (-)EnsemblGRCm39 Ensembl
GRCm381441,448,197 - 41,453,556 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1441,448,203 - 41,453,518 (-)EnsemblGRCm38mm10GRCm38
MGSCv371442,261,033 - 42,266,948 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv371442,261,033 - 42,266,948 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361440,356,457 - 40,362,221 (-)NCBIMGSCv36mm8
Cytogenetic Map14BNCBI
cM Map1422.37NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Gm7954
154 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:182
Count of miRNA genes:159
Interacting mature miRNAs:168
Transcripts:ENSMUST00000164967
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4141864Mrdq4_mmodifier of retinal degeneration QTL 4 (mouse)Not determined992324548765082Mouse
1300779Dyscalc4_mdystrophic cardiac calcinosis 4 (mouse)Not determined141221287146213007Mouse
27226748Femd8_mfemur midshaft diameter 8, 10 week (mouse)141376927346737457Mouse
27226752Femd4_mfemur midshaft diameter 4, 5 week (mouse)141376927347237457Mouse
1300544Hypn_mhyperinsulinemia (mouse)Not determined141516061649160765Mouse
1301372Sluc13_msusceptibility to lung cancer 13 (mouse)Not determined141882760452827726Mouse
1357589Kdnw2_mkidney weight 2 (mouse)Not determined1420887473121269804Mouse
1357527Epfpq1_mepididymal fat percentage QTL 1 (mouse)Not determined142106245071885801Mouse
14746973Manh76_mmandible shape 76 (mouse)142228721756287217Mouse
4142485Modor2_mmodifier of ocular retardation 2 (mouse)Not determined142492624858179769Mouse
13506929Recrq10_mrecombination rate in male meiosis QTL 10 (mouse)142792195761137449Mouse
10043886Cia49_mcollagen induced arthritis QTL 49 (mouse)Not determined142999699463997133Mouse
27226775Tibl7_mtibia length 7, 5 week (mouse)143032195748837457Mouse
27226744Metcl6_mmetatarsal-calcaneal length 6, 5 week (mouse)143032195752937457Mouse
27226774Tibl15_mtibia length 15, 10 week (mouse)143032195787937436Mouse
1300909Ath13_matherosclerosis 13 (mouse)Not determined143033525064335381Mouse
1300998Cia17_mcollagen induced arthritis 17 (mouse)Not determined143033525064335381Mouse
27226737Metcl12_mmetatarsal-calcaneal length 12, 10 week (mouse)143322195759437449Mouse
27226727Tibl21_mtibia length 21, 16 week (mouse)143412195752937457Mouse
1300625Cosz2_mcocaine seizure 2 (mouse)Not determined143504579768785736Mouse
10043887Cia50_mcollagen induced arthritis QTL 50 (mouse)Not determined143743018571430320Mouse
4142419Tgq26_mtriglyceride QTL 26 (mouse)Not determined4033731974337319Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000164967   ⟹   ENSMUSP00000128216
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1441,170,922 - 41,175,465 (-)Ensembl
GRCm38.p6 Ensembl1441,448,203 - 41,453,518 (-)Ensembl
RefSeq Acc Id: NM_001378646   ⟹   NP_001365575
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391441,170,154 - 41,175,513 (-)NCBI
GRCm381441,448,197 - 41,453,556 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036158333   ⟹   XP_036014226
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391441,172,055 - 41,175,499 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001365575 (Get FASTA)   NCBI Sequence Viewer  
  XP_036014226 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: NP_001365575   ⟸   NM_001378646
RefSeq Acc Id: ENSMUSP00000128216   ⟸   ENSMUST00000164967
RefSeq Acc Id: XP_036014226   ⟸   XM_036158333
- Peptide Label: isoform X1


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3648778 AgrOrtholog
Ensembl Genes ENSMUSG00000093863 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000164967 ENTREZGENE
MGD MGI:3648778 ENTREZGENE
NCBI Gene Gm7954 ENTREZGENE
PhenoGen Gm7954 PhenoGen