Gm7954 (predicted gene 7954) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Gm7954 (predicted gene 7954) Mus musculus
Analyze
No known orthologs.
Symbol: Gm7954
Name: predicted gene 7954
RGD ID: 1619404
MGI Page MGI
Description:
Type: protein-coding (Ensembl: transcribed_unprocessed_pseudogene)
RefSeq Status: VALIDATED
Previously known as: EG666156; uncharacterized protein LOC102635067
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391441,170,154 - 41,175,513 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1441,170,922 - 41,175,465 (-)EnsemblGRCm39 Ensembl
GRCm381441,448,197 - 41,453,556 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1441,448,203 - 41,453,518 (-)EnsemblGRCm38mm10GRCm38
MGSCv371442,261,033 - 42,266,948 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361440,356,457 - 40,362,221 (-)NCBIMGSCv36mm8
Cytogenetic Map14BNCBI
cM Map1422.37NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Gm7954Mousebiological_process involved_inND 2290270 MGIGO_REF:0000015

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Gm7954Mousecellular_component is_active_inND 2290270 MGIGO_REF:0000015

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Gm7954Mousemolecular_function enablesND 2290270 MGIGO_REF:0000015


#
Reference Title
Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions


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Variants in Gm7954
154 total Variants

Predicted Target Of
Summary Value
Count of predictions:182
Count of miRNA genes:159
Interacting mature miRNAs:168
Transcripts:ENSMUST00000164967
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 22 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1357589Kdnw2_mkidney weight 2 (mouse)Not determined1420887473121269804Mouse
1300625Cosz2_mcocaine seizure 2 (mouse)Not determined143504579768785736Mouse
27226748Femd8_mfemur midshaft diameter 8, 10 week (mouse)141376927346737457Mouse
1357527Epfpq1_mepididymal fat percentage QTL 1 (mouse)Not determined142106245071885801Mouse
27226744Metcl6_mmetatarsal-calcaneal length 6, 5 week (mouse)143032195752937457Mouse
27226775Tibl7_mtibia length 7, 5 week (mouse)143032195748837457Mouse
27226774Tibl15_mtibia length 15, 10 week (mouse)143032195787937436Mouse
4142485Modor2_mmodifier of ocular retardation 2 (mouse)Not determined142492624858179769Mouse
4142419Tgq26_mtriglyceride QTL 26 (mouse)Not determined4033731974337319Mouse
27226737Metcl12_mmetatarsal-calcaneal length 12, 10 week (mouse)143322195759437449Mouse

1 to 10 of 22 rows





RefSeq Transcripts NM_001378646 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036158333 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC134253 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000164967   ⟹   ENSMUSP00000128216
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1441,170,922 - 41,175,465 (-)Ensembl
GRCm38.p6 Ensembl1441,448,203 - 41,453,518 (-)Ensembl
RefSeq Acc Id: NM_001378646   ⟹   NP_001365575
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391441,170,154 - 41,175,513 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036158333   ⟹   XP_036014226
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391441,172,055 - 41,175,499 (-)NCBI
Sequence:
Protein RefSeqs NP_001365575 (Get FASTA)   NCBI Sequence Viewer  
  XP_036014226 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Acc Id: ENSMUSP00000128216   ⟸   ENSMUST00000164967
RefSeq Acc Id: NP_001365575   ⟸   NM_001378646
- UniProtKB: F6VRJ8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036014226   ⟸   XM_036158333
- Peptide Label: isoform X1
- UniProtKB: F6VRJ8 (UniProtKB/TrEMBL)



Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000093863 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000164967 ENTREZGENE
MGD MGI:3648778 ENTREZGENE
NCBI Gene Gm7954 ENTREZGENE
PhenoGen Gm7954 PhenoGen
UniProt F6VRJ8 ENTREZGENE