Gm7970 (predicted gene 7970) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Gm7970 (predicted gene 7970) Mus musculus
Analyze
No known orthologs.
Symbol: Gm7970
Name: predicted gene 7970
RGD ID: 1619390
MGI Page MGI
Description:
Type: protein-coding (Ensembl: unprocessed_pseudogene)
RefSeq Status: VALIDATED
Previously known as: disks large homolog 5-like; EG666186; uncharacterized protein LOC666186
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391441,272,071 - 41,277,578 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1441,272,720 - 41,277,540 (-)EnsemblGRCm39 Ensembl
GRCm381441,550,114 - 41,555,621 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1441,550,120 - 41,555,583 (-)EnsemblGRCm38mm10GRCm38
MGSCv371442,365,310 - 42,368,862 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361440,458,833 - 40,464,290 (-)NCBIMGSCv36mm8
Cytogenetic Map14BNCBI
cM Map1422.38NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Gm7970Mousebiological_process involved_inND 2290270 MGIGO_REF:0000015

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Gm7970Mousecellular_component is_active_inND 2290270 MGIGO_REF:0000015

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Gm7970Mousemolecular_function enablesND 2290270 MGIGO_REF:0000015


#
Reference Title
Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:17610818  



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Variants in Gm7970
54 total Variants

Predicted Target Of
Summary Value
Count of predictions:183
Count of miRNA genes:160
Interacting mature miRNAs:172
Transcripts:ENSMUST00000167615
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 22 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1357589Kdnw2_mkidney weight 2 (mouse)Not determined1420887473121269804Mouse
1300625Cosz2_mcocaine seizure 2 (mouse)Not determined143504579768785736Mouse
27226748Femd8_mfemur midshaft diameter 8, 10 week (mouse)141376927346737457Mouse
1357527Epfpq1_mepididymal fat percentage QTL 1 (mouse)Not determined142106245071885801Mouse
27226744Metcl6_mmetatarsal-calcaneal length 6, 5 week (mouse)143032195752937457Mouse
27226775Tibl7_mtibia length 7, 5 week (mouse)143032195748837457Mouse
27226774Tibl15_mtibia length 15, 10 week (mouse)143032195787937436Mouse
4142485Modor2_mmodifier of ocular retardation 2 (mouse)Not determined142492624858179769Mouse
4142419Tgq26_mtriglyceride QTL 26 (mouse)Not determined4033731974337319Mouse
27226737Metcl12_mmetatarsal-calcaneal length 12, 10 week (mouse)143322195759437449Mouse

1 to 10 of 22 rows






Ensembl Acc Id: ENSMUST00000167615   ⟹   ENSMUSP00000125877
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1441,272,720 - 41,277,540 (-)Ensembl
GRCm38.p6 Ensembl1441,550,120 - 41,555,583 (-)Ensembl
RefSeq Acc Id: NM_001378709   ⟹   NP_001365638
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391441,272,071 - 41,277,578 (-)NCBI
GRCm381441,550,114 - 41,555,621 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036158795   ⟹   XP_036014688
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391441,273,740 - 41,277,576 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036158796   ⟹   XP_036014689
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391441,272,535 - 41,277,576 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036158797   ⟹   XP_036014690
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391441,273,740 - 41,277,530 (-)NCBI
Sequence:
Protein RefSeqs NP_001365638 (Get FASTA)   NCBI Sequence Viewer  
  XP_036014688 (Get FASTA)   NCBI Sequence Viewer  
  XP_036014689 (Get FASTA)   NCBI Sequence Viewer  
  XP_036014690 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001365638   ⟸   NM_001378709
- UniProtKB: F6VRJ8 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSMUSP00000125877   ⟸   ENSMUST00000167615
RefSeq Acc Id: XP_036014689   ⟸   XM_036158796
- Peptide Label: isoform X2
RefSeq Acc Id: XP_036014688   ⟸   XM_036158795
- Peptide Label: isoform X1
- UniProtKB: F6VRJ8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036014690   ⟸   XM_036158797
- Peptide Label: isoform X3



Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000093833 Ensembl
MGD MGI:3644387 ENTREZGENE
NCBI Gene 666186 ENTREZGENE
PhenoGen Gm7970 PhenoGen
UniProt F6VRJ8 ENTREZGENE