Tcstv6a (Tcstv family member 6A) - Rat Genome Database

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Gene: Tcstv6a (Tcstv family member 6A) Mus musculus
Analyze
Symbol: Tcstv6a (Ensembl: Tcstv6)
Name: Tcstv family member 6A (Ensembl:Tcstv family member 6)
RGD ID: 1619219
MGI Page MGI
Description: INTERACTS WITH 2,4-diaminotoluene; benzo[b]fluoranthene; Benzo[k]fluoranthene
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AU015195; AU016312; D13Ertd608e; DNA segment, Chr 13, ERATO Doi 608, expressed; Tcstv family member 6; Tcstv6
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3913120,306,880 - 120,308,226 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl13120,297,542 - 120,308,106 (+)EnsemblGRCm39 Ensembl
GRCm3813119,845,361 - 119,846,690 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl13119,836,006 - 119,846,570 (+)EnsemblGRCm38mm10GRCm38
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:10725249   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:16141072   PMID:16141073  


Genomics

Variants

.
Variants in Tcstv6a
57 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
14700691Cisaq1_mcoxsackieviral infection serum ALT QTL 1 (mouse)1386148119120461536Mouse
1301142Heal2_mwound healing/regeneration 2 (mouse)Not determined1393875267120883175Mouse
1300939Hrtfm6_mheart failure modifier 6 (mouse)Not determined1391383692120883175Mouse
1357468Rplag_mreduced platelet aggregation (mouse)Not determined1395502130120883175Mouse
4140995Fbtq6_mfemoral bone trait QTL 6 (mouse)Not determined1386341617120341758Mouse
1558763Gct9_mgranulosa cell tumorigenesis 9 (mouse)Not determined1395036824120883175Mouse
12879496Fexq2_mfear expression QTL 2 (mouse)13100741519120883175Mouse
4142338Skmw18_mskeletal muscle weight 18 (mouse)Not determined1394528399120883175Mouse
1300876Tanidd2_mtally ho associated non-insulin dependednt diabetes mellitus 2 (mouse)Not determined1391965303120883175Mouse
14746974Manh75_mmandible shape 75 (mouse)1399386647120883175Mouse
4142400Tgq24_mtriglyceride QTL 24 (mouse)Not determined102602630120883175Mouse

Markers in Region
AU015195  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3813120,214,681 - 120,214,803UniSTSGRCm38
GRCm3813119,846,482 - 119,846,604UniSTSGRCm38
Whitehead/MRC_RH131028.5UniSTS
AU016312  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3813119,846,482 - 119,846,667UniSTSGRCm38
GRCm3813120,214,618 - 120,214,803UniSTSGRCm38
D13Ertd608e  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3813120,214,699 - 120,214,901UniSTSGRCm38
GRCm3813119,846,384 - 119,846,586UniSTSGRCm38
cM Map1370.0UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000179131   ⟹   ENSMUSP00000136381
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl13120,297,542 - 120,308,042 (+)Ensembl
GRCm38.p6 Ensembl13119,836,006 - 119,846,506 (+)Ensembl
Ensembl Acc Id: ENSMUST00000195797   ⟹   ENSMUSP00000142107
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl13120,306,884 - 120,308,106 (+)Ensembl
GRCm38.p6 Ensembl13119,845,348 - 119,846,570 (+)Ensembl
RefSeq Acc Id: NM_001424715   ⟹   NP_001411644
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3913120,306,880 - 120,308,226 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001411644 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI47107 (Get FASTA)   NCBI Sequence Viewer  
  AAI47108 (Get FASTA)   NCBI Sequence Viewer  
  BAE25327 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000136381.2
  ENSMUSP00000136809.2
  ENSMUSP00000142107
  ENSMUSP00000142107.2
  ENSMUSP00000153466.2
Ensembl Acc Id: ENSMUSP00000136381   ⟸   ENSMUST00000179131
Ensembl Acc Id: ENSMUSP00000142107   ⟸   ENSMUST00000195797
RefSeq Acc Id: NP_001411644   ⟸   NM_001424715
- UniProtKB: Q3UPR8 (UniProtKB/TrEMBL),   J3QMN9 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q3UPR8-F1-model_v2 AlphaFold Q3UPR8 1-151 view protein structure

Promoters
RGD ID:8681410
Promoter ID:EPDNEW_M18736
Type:single initiation site
Name:D13Ertd608e_1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3813119,845,344 - 119,845,404EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000094027 UniProtKB/TrEMBL
  ENSMUSG00000095514 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000177561.2 UniProtKB/TrEMBL
  ENSMUST00000179131.2 UniProtKB/TrEMBL
  ENSMUST00000195797 ENTREZGENE
  ENSMUST00000195797.2 UniProtKB/TrEMBL
  ENSMUST00000225881.2 UniProtKB/TrEMBL
InterPro DUF1438 UniProtKB/TrEMBL
MGD MGI:1277199 ENTREZGENE
NCBI Gene 52673 ENTREZGENE
PANTHER 2-CELL-STAGE, VARIABLE GROUP, MEMBER 1-RELATED UniProtKB/TrEMBL
  PTHR31647 UniProtKB/TrEMBL
Pfam DUF1438 UniProtKB/TrEMBL
PhenoGen Tcstv6a PhenoGen
UniProt J3QMN9 ENTREZGENE, UniProtKB/TrEMBL
  Q3UPR8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-06-03 Tcstv6a  Tcstv family member 6A  Tcstv6  Tcstv family member 6  Symbol and/or name updated 27372883 PROVISIONAL
2023-10-23 Tcstv6  Tcstv family member 6  D13Ertd608e  DNA segment, Chr 13, ERATO Doi 608, expressed  Symbol and/or name updated 27372883 PROVISIONAL
2023-10-18 D13Ertd608e  DNA segment, Chr 13, ERATO Doi 608, expressed  Tcstv6  DNA segment, Chr 13, ERATO Doi 608, expressed  Symbol and/or name change 5135510 APPROVED
2023-10-10 Tcstv6  DNA segment, Chr 13, ERATO Doi 608, expressed  D13Ertd608e  DNA segment, Chr 13, ERATO Doi 608, expressed  Symbol and/or name change 5135510 APPROVED