Vmn1r-ps28 (vomeronasal 1 receptor, pseudogene 28) - Rat Genome Database

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Gene: Vmn1r-ps28 (vomeronasal 1 receptor, pseudogene 28) Mus musculus
Analyze
Symbol: Vmn1r-ps28
Name: vomeronasal 1 receptor, pseudogene 28
RGD ID: 1618208
MGI Page MGI
Description:
Type: pseudo (Ensembl: unprocessed_pseudogene)
RefSeq Status: INFERRED
Previously known as: V1r; V1r-ps4; V1RB3
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39689,884,659 - 89,885,600 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl689,884,659 - 89,885,600 (+)EnsemblGRCm39 Ensembl
GRCm38689,907,677 - 89,908,618 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl689,907,677 - 89,908,618 (+)EnsemblGRCm38mm10GRCm38
MGSCv37689,857,671 - 89,858,612 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36689,873,181 - 89,874,122 (+)NCBIMGSCv36mm8
Celera691,815,597 - 91,816,538 (+)NCBICelera
Cytogenetic Map6D1NCBI
cM Map640.02NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


PMID:11116090   PMID:19952141   PMID:20003482  



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Variants in Vmn1r-ps28
57 total Variants

Predicted Target Of
Summary Value
Count of predictions:152
Count of miRNA genes:145
Interacting mature miRNAs:149
Transcripts:ENSMUST00000174767
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 46 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396633110Mouse
10043864T2dm4sa_mtype 2 diabetes mellitus 4 in SMXA RI mice (mouse)Not determined683690851146954059Mouse
1301521Pas1c_mpulmonary adenoma susceptibility 1c (mouse)Not determined671958006105958152Mouse
14697704Stsl4_mSalmonella typhimurium susceptibility locus 4 (mouse)67707698389976982Mouse
10412119Stv_mstriatal volumne (mouse)Not determined660026991100026967Mouse
1300954Fcsa1_mfemoral cross-sectional area 1 (mouse)Not determined671958006105958152Mouse
13824985Alh1_mamplitude of lateral head displacement 1 (mouse)67797698396976961Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46912919136400690Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648696934125336963Mouse
12792979Fbmd2_mfemoral bone mineral density 2, females only (mouse)675026989115026943Mouse

1 to 10 of 46 rows






Ensembl Acc Id: ENSMUST00000174767
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl689,884,659 - 89,885,600 (+)Ensembl
GRCm38.p6 Ensembl689,907,677 - 89,908,618 (+)Ensembl
GenBank Protein BAB79221 (Get FASTA)   NCBI Sequence Viewer  



Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000092228 Ensembl, ENTREZGENE
MGD MGI:2148534 ENTREZGENE
NCBI Gene 113872 ENTREZGENE
PhenoGen Vmn1r-ps28 PhenoGen


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 Vmn1r-ps28  vomeronasal 1 receptor, pseudogene 28  V1r-ps4  vomeronasal 1 receptor, pseudogene 4  Symbol and/or name change 5135510 APPROVED