Gm9958 (predicted gene 9958) - Rat Genome Database

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Gene: Gm9958 (predicted gene 9958) Mus musculus
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Symbol: Gm9958
Name: predicted gene 9958
RGD ID: 1616879
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: ENSMUSG00000054945
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39590,514,856 - 90,516,347 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl590,514,479 - 90,516,352 (+)EnsemblGRCm39 Ensembl
GRCm38590,366,997 - 90,368,488 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl590,366,620 - 90,368,488 (+)EnsemblGRCm38mm10GRCm38
MGSCv37590,796,023 - 90,797,514 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera588,527,242 - 88,528,733 (+)NCBICelera
Cytogenetic Map5E1NCBI
cM Map544.5NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Gm9958Mousebiological_process involved_inND 2290270 MGIGO_REF:0000015

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Gm9958Mousecellular_component is_active_inND 2290270 MGIGO_REF:0000015

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Gm9958Mousemolecular_function enablesND 2290270 MGIGO_REF:0000015

PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073  



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Variants in Gm9958
57 total Variants

Predicted Target Of
Summary Value
Count of predictions:69
Count of miRNA genes:68
Interacting mature miRNAs:68
Transcripts:ENSMUST00000068250
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 55 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
4140990Lgq6_mlate growth QTL 6 (mouse)Not determined32133234100777931Mouse
1301010ahl2_mage related hearing loss 2 (mouse)Not determined56265056896650688Mouse
1301399Cpfd3_mcerebellum pattern fissures (mouse)Not determined587386871121387065Mouse
12910784Pwgrq15_mpost-weaning growth rate QTL 15 (mouse)57717582397658215Mouse
1301524Lmb2_mlupus in MRL and B6 F2 cross (mouse)Not determined537581488112465722Mouse
25314315Mlh1fc4_mMLH1 foci count 4 (mouse)574460661132528839Mouse
1357725Eae39_mexperimental allergic encephalomyelitis 39 (mouse)Not determined589418876118864028Mouse
10045972Tir5_mtrypanosome infection response 5 (mouse)Not determined563705442104387065Mouse
1301126Bwem1_mbody weight day 30 males 1 (mouse)Not determined587386871121387065Mouse
4141219W10q16_mweight 10 weeks QTL 16 (mouse)Not determined32133234100777931Mouse

1 to 10 of 55 rows






Ensembl Acc Id: ENSMUST00000068250
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl590,515,063 - 90,516,346 (+)Ensembl
GRCm38.p6 Ensembl590,367,204 - 90,368,487 (+)Ensembl
Ensembl Acc Id: ENSMUST00000238484
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl590,514,479 - 90,516,352 (+)Ensembl
GRCm38.p6 Ensembl590,366,620 - 90,368,488 (+)Ensembl
RefSeq Acc Id: NR_045618
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39590,514,856 - 90,516,347 (+)NCBI
GRCm38590,366,997 - 90,368,488 (+)ENTREZGENE
Celera588,527,242 - 88,528,733 (+)ENTREZGENE
cM Map5 ENTREZGENE
Sequence:
GenBank Protein BAC30622 (Get FASTA)   NCBI Sequence Viewer  
  EDL05323 (Get FASTA)   NCBI Sequence Viewer  

RGD ID:15092912
Promoter ID:EPDNEWNC_M801
Type:multiple initiation site
Name:Gm9958_1
Description:predicted gene 9958 [Source:MGI Symbol;Acc:MGI:3641866]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38590,366,633 - 90,366,693EPDNEWNC


1 to 9 of 9 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000054945 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000068250 ENTREZGENE
MGD MGI:3641866 ENTREZGENE
NCBI Gene 791294 ENTREZGENE
PhenoGen Gm9958 PhenoGen
RNAcentral URS000075AC77 RNACentral
  URS0000EEDB96 RNACentral
  URS00025F22E6 RNACentral
UniProt Q8C9U4_MOUSE UniProtKB/TrEMBL
1 to 9 of 9 rows