Slc35b4 (solute carrier family 35, member B4)

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Gene: Slc35b4 (solute carrier family 35, member B4) Mus musculus

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Symbol:

Slc35b4

Name:

solute carrier family 35, member B4

RGD ID:

1615909

MGI Page

MGI

Description:

Predicted to enable UDP-N-acetylglucosamine transmembrane transporter activity and UDP-xylose transmembrane transporter activity. Acts upstream of or within regulation of gluconeogenesis. Predicted to be located in Golgi apparatus and endoplasmic reticulum. Predicted to be active in Golgi membrane and endoplasmic reticulum membrane. Is expressed in several structures, including alimentary system; brain; genitourinary system; respiratory system; and sensory organ. Orthologous to human SLC35B4 (solute carrier family 35 member B4).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

4930474D06Rik; AB041549; AW494345; expressed sequence AW494345; nucleotide sugar transporter SLC35B4; solute carrier family 35 member B4; UDP-xylose and UDP-N-acetylglucosamine transporter

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SLC35B4 (solute carrier family 35 member B4)	HGNC	EggNOG, Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Rattus norvegicus (Norway rat):	Slc35b4 (solute carrier family 35 member B4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Slc35b4 (solute carrier family 35 member B4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SLC35B4 (solute carrier family 35 member B4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SLC35B4 (solute carrier family 35 member B4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Slc35b4 (solute carrier family 35 member B4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SLC35B4 (solute carrier family 35 member B4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SLC35B4 (solute carrier family 35 member B4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Slc35b4 (solute carrier family 35 member B4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Rattus norvegicus (Norway rat):	Slc35b4 (solute carrier family 35 member B4)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	SLC35B4 (solute carrier family 35 member B4)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	slc35b4 (solute carrier family 35 member B4)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG14511	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)
Saccharomyces cerevisiae (baker's yeast):	YEA4	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	nstp-1	Alliance	DIOPT (OMA\|OrthoFinder\|PANTHER)
Caenorhabditis elegans (roundworm):	nstp-2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Efr	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	slc35b4	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	34,132,810 - 34,153,921 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	34,130,315 - 34,154,046 (-)	Ensembl		GRCm39 Ensembl
GRCm38	6	34,155,872 - 34,177,054 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	34,153,380 - 34,177,111 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	6	34,105,879 - 34,127,054 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	6	34,086,037 - 34,107,212 (-)	NCBI		MGSCv36	mm8
Celera	6	34,153,134 - 34,174,309 (-)	NCBI		Celera
Cytogenetic Map	6	A3.3	NCBI
cM Map	6	14.75	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

pleomorphic xanthoastrocytoma (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (EXP)

1,2-dimethylhydrazine (EXP)

17alpha-ethynylestradiol (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2-amino-4,6-dinitrotoluene (ISO)

3,4-methylenedioxymethamphetamine (EXP)

6-propyl-2-thiouracil (ISO)

acrylamide (ISO)

aflatoxin B1 (EXP)

all-trans-retinoic acid (ISO)

amitrole (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (ISO)

buspirone (ISO)

butanal (ISO)

carbon nanotube (EXP)

CGP 52608 (ISO)

chlorpyrifos (EXP)

cisplatin (ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

diuron (ISO)

epoxiconazole (EXP)

fenthion (EXP)

fipronil (ISO)

flutamide (ISO)

gentamycin (ISO)

glafenine (ISO)

methidathion (EXP)

methimazole (ISO)

methylparaben (ISO)

nimesulide (ISO)

ozone (EXP)

paracetamol (ISO)

perfluorooctane-1-sulfonic acid (EXP)

pirinixic acid (EXP)

sodium arsenite (ISO)

Soman (ISO)

sulfadimethoxine (ISO)

tamoxifen (EXP)

temozolomide (ISO)

thioacetamide (ISO)

titanium dioxide (EXP)

triphenyl phosphate (ISO)

urethane (ISO)

valproic acid (ISO)

vinclozolin (ISO)

zidovudine (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

regulation of gluconeogenesis (IMP)

UDP-N-acetylglucosamine transmembrane transport (IBA,IEA,ISO)

UDP-xylose transmembrane transport (IEA,ISO)

Cellular Component

endoplasmic reticulum (ISO)

endoplasmic reticulum membrane (IBA,IEA)

Golgi apparatus (ISO)

Golgi membrane (IBA)

Molecular Function

protein binding (ISO)

UDP-N-acetylglucosamine transmembrane transporter activity (IBA,IEA,ISO)

UDP-xylose transmembrane transporter activity (IBA,ISO)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

abnormal embryo size (IEA)

abnormal forebrain development (IEA)

abnormal heart morphology (IEA)

abnormal hindbrain development (IEA)

abnormal midbrain development (IEA)

abnormal neural tube closure (IEA)

embryonic growth retardation (IEA)

embryonic lethality prior to tooth bud stage (IEA)

enlarged heart (IEA)

hyperactivity (IEA)

increased heart weight (IEA)

preweaning lethality, complete penetrance (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Mouse MP Annotation Import Pipeline	RGD automated import pipeline
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:8889548	PMID:10349636	PMID:10922068	PMID:11042159	PMID:11076861	PMID:11217851	PMID:12466851	PMID:12477932	PMID:14610273	PMID:14681479	PMID:15489334	PMID:15911612
PMID:16141072	PMID:16141073	PMID:18799693	PMID:20798045	PMID:21267068	PMID:21507882	PMID:21862448	PMID:21873635	PMID:24194600	PMID:29867058	PMID:38355793

Genomics

Comparative Map Data

Slc35b4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	34,132,810 - 34,153,921 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	34,130,315 - 34,154,046 (-)	Ensembl		GRCm39 Ensembl
GRCm38	6	34,155,872 - 34,177,054 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	34,153,380 - 34,177,111 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	6	34,105,879 - 34,127,054 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	6	34,086,037 - 34,107,212 (-)	NCBI		MGSCv36	mm8
Celera	6	34,153,134 - 34,174,309 (-)	NCBI		Celera
Cytogenetic Map	6	A3.3	NCBI
cM Map	6	14.75	NCBI

SLC35B4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	7	134,289,332 - 134,320,338 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	7	134,289,332 - 134,316,930 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	7	133,974,084 - 134,001,682 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	7	133,624,629 - 133,652,343 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	7	133,431,346 - 133,459,058	NCBI
Celera	7	128,711,529 - 128,739,279 (-)	NCBI		Celera
Cytogenetic Map	7	q33	NCBI
HuRef	7	128,275,903 - 128,303,642 (-)	NCBI		HuRef
CHM1_1	7	133,908,420 - 133,936,166 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	7	135,597,448 - 135,628,436 (-)	NCBI		T2T-CHM13v2.0
CRA_TCAGchr7v2	7	133,318,463 - 133,346,213 (-)	NCBI

Slc35b4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	63,744,188 - 63,766,200 (-)	NCBI		GRCr8
mRatBN7.2	4	62,776,993 - 62,799,013 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	62,776,993 - 62,799,003 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	4	67,727,672 - 67,749,623 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	63,643,398 - 63,665,349 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	62,045,805 - 62,067,760 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	61,550,995 - 61,573,003 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	61,550,995 - 61,573,003 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	61,271,551 - 61,293,559 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	61,480,810 - 61,502,818 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	4	61,759,346 - 61,778,774 (-)	NCBI
Celera	4	57,829,712 - 57,851,719 (-)	NCBI		Celera
Cytogenetic Map	4	q22	NCBI

Slc35b4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955410	33,695,499 - 33,723,694 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955410	33,695,985 - 33,728,749 (+)	NCBI	ChiLan1.0	ChiLan1.0

SLC35B4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	6	171,107,228 - 171,135,051 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	7	23,117,483 - 23,145,282 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	7	126,249,622 - 126,277,395 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	7	138,756,637 - 138,784,078 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	7	138,761,768 - 138,783,720 (-)	Ensembl	panpan1.1		panPan2

SLC35B4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	14	3,120,901 - 3,166,622 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	14	3,120,934 - 3,149,926 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	14	2,777,771 - 2,806,756 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	14	2,850,661 - 2,896,364 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	14	2,850,651 - 2,884,651 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	14	3,054,439 - 3,083,441 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	14	2,799,262 - 2,828,250 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	14	2,945,417 - 2,974,427 (+)	NCBI		UU_Cfam_GSD_1.0

Slc35b4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	21,322,350 - 21,344,634 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936579	1,454,916 - 1,477,232 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936579	1,454,951 - 1,474,035 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SLC35B4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	18	14,880,765 - 14,911,468 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	18	14,880,322 - 14,916,406 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	18	15,800,876 - 15,820,562 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SLC35B4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	21	102,909,444 - 102,935,021 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	21	102,913,084 - 102,935,141 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666042	413,088 - 435,566 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Slc35b4
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624783	2,079,154 - 2,109,287 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624783	2,079,324 - 2,110,001 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	2428
Count of miRNA genes:	834
Interacting mature miRNAs:	1132
Transcripts:	ENSMUST00000019143, ENSMUST00000138250, ENSMUST00000145857, ENSMUST00000146514
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
4142271	Egq8_m	early growth QTL 8 (mouse)			Not determined			4503823	96633110	Mouse
4140989	Spqq2_m	sperm quality QTL 2 (mouse)			Not determined			17711598	51711719	Mouse
26884441	Sklq3_m	skull length QTL 3, 5 week (mouse)					6	7600000	80576983	Mouse
1357520	Axtq2_m	anxiety QTL 2 (mouse)			Not determined		6	4503823	48703611	Mouse
10043869	Cia6a_m	collagen induced arthritis QTL 6a (mouse)			Not determined		6	12117971	46118069	Mouse
11252142	Mom12_m	Modifier of Min 12 (mouse)					6	33872261	67872400	Mouse
1301850	Fglu_m	fasting glucose (mouse)			Not determined		6	17711598	51711719	Mouse
4141749	Obrq2_m	obesity resistance QTL 2 (mouse)			Not determined			12751221	46751333	Mouse
1300959	Lxw2_m	lupus BXSB x NZW 2 (mouse)			Not determined		6	33872261	67872400	Mouse
1301724	Pcd4ts1_m	p-glycoprotein positive CD4 T cell subset 1 (mouse)			Not determined		6	17711598	51711719	Mouse
4142126	W3q3_m	weight 3 weeks QTL 3 (mouse)			Not determined			4503823	96633110	Mouse
10412107	Desp4_m	despair 4 (mouse)			Not determined		6	20049830	54049830	Mouse
1357442	Dbts1_m	diabetes 1 (mouse)			Not determined		6	18234147	73364675	Mouse
4141988	Obrq3_m	obesity resistance QTL 3 (mouse)			Not determined			28290993	62291115	Mouse
11353841	Bmiq3_m	body mass index QTL 3 (mouse)					6	4503823	48703611	Mouse
11353840	Bmiq2_m	body mass index QTL 2 (mouse)					6	4503823	45291115	Mouse
1300556	Cia6_m	collagen induced arthritis QTL 6 (mouse)			Not determined		6	4464884	87403016	Mouse
11352717	Obrq2a_m	obesity resistance QTL 2a (mouse)					6	31694341	34847895	Mouse
25440480	Moaq2_m	modifier of alien QTL 2 (mouse)					6	3050001	117476961	Mouse
26884414	Bzwq12_m	bi-zygomatic width QTL 12, 16 week (mouse)					6	3400000	139076998	Mouse
4142361	W10q11_m	weight 10 weeks QTL 11 (mouse)			Not determined			4503823	96633110	Mouse
4142232	W6q4_m	weight 6 weeks QTL 4 (mouse)			Not determined			4503823	96633110	Mouse
1300731	Smdq3_m	segregation of mitochondrial DNA QTL 3 (mouse)			Not determined		6	4249206	38249325	Mouse
12904940	Edlmmq5_m	extensor digitorum longus muscle mass QTL 5 (mouse)					6	19616346	53616346	Mouse
15039372	Nmrs22_m	NAFLD-associated magnetic resonance shift 22 (mouse)					6	1476334	35476334	Mouse
4141782	Mrdq5_m	modifier of retinal degeneration QTL 5 (mouse)			Not determined			32827585	78215957	Mouse
12904943	Tammq4_m	tibialis anterior muscle mass QTL 4 (mouse)					6	19616346	53616346	Mouse
10412213	Sxbq2_m	SGC/Knj cross B6 QTL 2 (mouse)			Not determined		6	19912685	71299759	Mouse
12880425	V25Dq5_m	vitamin D inactive form serum level QTL 5 (mouse)					6	32676980	66676980	Mouse
1302051	Sluc7_m	susceptibility to lung cancer 7 (mouse)			Not determined		6	9297074	43297168	Mouse
4141454	Obrq4_m	obesity resistance QTL 4 (mouse)			Not determined			31703499	65703611	Mouse
14700690	Ccs6_m	colon cancer susceptibility 6 (mouse)					6	23776934	57776934	Mouse
27226726	Tibmd7_m	tibia midshaft diameter 7, 16 week (mouse)					6	17699999	53476985	Mouse
12904952	Gmmq4_m	gastrocnemius muscle mass QTL 4 (mouse)					6	19616346	53616346	Mouse
1357481	Aaj2_m	anxiety in A/J 2 (mouse)			Not determined		6	4503823	48703611	Mouse
1301998	Bts2_m	bladder tumor susceptibility 2 (mouse)			Not determined		6	12751221	46751333	Mouse
13208564	Bmiq7_m	body mass index QTL 7 (mouse)					6	24999999	79976983	Mouse

Markers in Region

D6Mit310

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	6	34,162,506 - 34,162,627	UniSTS	GRCm38
MGSCv37	6	34,112,506 - 34,112,627	UniSTS	GRCm37
Celera	6	34,159,761 - 34,159,882	UniSTS
Cytogenetic Map	6	B1	UniSTS
cM Map	6	15.7	UniSTS
Whitehead Genetic	6	7.7	UniSTS
Whitehead/MRC_RH	6	270.2	UniSTS
Whitehead_YAC	6		UniSTS

UniSTS:235405

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	6	34,155,776 - 34,155,975	UniSTS	GRCm38
MGSCv37	6	34,105,776 - 34,105,975	UniSTS	GRCm37
Celera	6	34,153,031 - 34,153,230	UniSTS
Cytogenetic Map	6	B1	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_021435	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_184551	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AB041549	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC153817	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK029046	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK029969	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK033913	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK036630	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK042150	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK045791	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK138591	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK163299	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC016275	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC033512	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466533	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSMUST00000019143 ⟹ ENSMUSP00000019143

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	6	34,130,315 - 34,154,046 (-)	Ensembl
GRCm38.p6 Ensembl	6	34,153,380 - 34,177,111 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000138250 ⟹ ENSMUSP00000138721

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	6	34,137,453 - 34,154,017 (-)	Ensembl
GRCm38.p6 Ensembl	6	34,160,518 - 34,177,082 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000145857

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	6	34,135,020 - 34,153,905 (-)	Ensembl
GRCm38.p6 Ensembl	6	34,158,085 - 34,176,970 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000146514

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	6	34,133,658 - 34,140,417 (-)	Ensembl
GRCm38.p6 Ensembl	6	34,156,723 - 34,163,482 (-)	Ensembl

RefSeq Acc Id:

NM_021435 ⟹ NP_067410

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	6	34,132,810 - 34,153,921 (-)	NCBI
GRCm38	6	34,155,879 - 34,177,054 (-)	NCBI
MGSCv37	6	34,105,879 - 34,127,054 (-)	RGD
Celera	6	34,153,134 - 34,174,309 (-)	RGD
cM Map	6		ENTREZGENE

Sequence:

show sequence

AAATGAATGGGACCGGGTATGACTGAGAACTACAGCTCCTGGTCTGGCCGCGTCGGTGGCAGCT
GCGGAGGAAGAGTTGATCAAGACGGCCCTCAGGGAGGGAACCGCTGGCGGTGGTGATGTTGCGC
GCGGATTTTCTAGGGTAGCGAACTGAAAGGGCGCTTTTTCTGCGCGCTGGCTCCCCGTGCCCCG
CACCGGCCATGCGCCCGGCCTTCGCGGTGGGCCTGGTGTTCGCAGGCTGCTGCAGTAATGTGAT
CTTCCTAGAGCTGCTGGCCCGGACACATCCAGGATGCGGGAACATCGTCACGTTTGCGCAGTTC
TTATTTATTGCTGTGGAAGGCTTCCTTTTTGAAGCTAACTTGGGAAGGAAGCCACCAGCTATCC
CAATAAGGTACTATGCCATCATGGTAACCATGTTCTTCACTGTCAGCGTGGTGAACAACTATGC
CCTGAACCTGAACATCGCCATGCCGCTGCATATGATATTCAGATCAGGCTCTCTGATTGCCAAC
ATGATTCTAGGAATTATCATTTTGAAGAAAAGATACAGTATGTTCAAGTATACCTCCATTGCCC
TGGTGTCTGCAGGGATATTTATTTGCACTTTCATGTCAGCAAAGCAGGTGACTGTCCAGACCGG
CTTGAGTGACAAGGATGGATTCCAGGCCTTTGCATGGTGGTTACTAGGTATTGCGGCACTGACC
TTCGCTCTGCTGATGTCGGCAAGAATGGGCATCTTCCAAGAGACTCTGTACAGACAGTTTGGGA
AGCACTCCAAGGAGGCGTTATTTTATAATCACGCCCTTCCACTTCCCGGGTTCATCTTCTTGGC
CTCTGATATTTATGACCACGTTGTCCTGTTCAATAAGTCTGAACTCTATCAAGTTCCAGTCATC
GGTGTGACGATGCCCGTCATGTGGTTCTACCTCCTCATGAATGTCGTGACTCAATATGTGTGCA
TCCGGGGTGTGTTCATCCTTACAACAGAGTGTACCTCCCTCACCGTCACACTGGTTGTGACTCT
GCGCAAGTTTGTGAGCCTCATCTTTTCTATCTTGTACTTCCAGAACCAGTTCACTATGTGGCAC
TGGCTGGGCACCTCGTTTGTCTTCATTGGAACCTTAATGTACACAGAGGTGTGGAAAAACCTCG
GGACCACAAAAAGTGAGCTGCAAAAGGATGACAAGAAGGACTGAGGTCTGCCTGGGACAGACAG
ACAGACGGTGTTATGTGAGAGCGGCCTCTGCTGCAGGTCTGGCCACCATTTCACTTTAGCTGAT
GCCAAATTACCAGAGTATTGAAGCAGAAAGGCTCCAGAGCTTCCTCCAAAAGGATGGGACTCAT
CTGCTCTCACGAGTCTGCATTTGTAGATTCCACATAGGCATCCCTGAGATAGAATAAACAAAAC
AAGCAAGGCTACCAGGCAGACCGTCGGGCAGCCTCTGCATTTGCTTTTCTATTTCTTTGCCAGA
ACATCAGAACCATATTTGTTGAATTCCAAGTCTCAGAGCTTCTAGTTTTCTACCTGTGTCGCAC
TTGTTGCTACCGATGCCTTTTTGCTATGTACCTCTTTCCTCCCGTCACCCCTGCACACTTAAGC
ACTTTGCAGCACAGCCAACATTCCAGGCACAATCAGGCACTGAGTGATCCAGTGGACATGCGAA
AAATTAGACCCCAGGAGTGATGAGGCCGGACTCCCTCCAGCGTGTTGGTGTTGGGAGAGAAGCA
GTTGTCCCCATGAGCAGATCTGTGAGCTGGATGCCGGTGATGCTGGAGTAGACGGCTGGATCCC
ACCACGCACATTTCACGTTATTTGATTAGTCAATGCAAAGATCACACACTTCTTTCACCTGTTG
CTTTCTGTAGTTAGAGCAGTCCTGCAGCGCTCATTGCACATTAGAAAGGAAGAAAACTTGAAAG
TGGATCGAGAAGAGGGAGACCTTTCCTTCCATCTCCCACGTGAAGCCCCTTGGCCTGTTTACGG
AGATGGAGAAGGAAGTGTGGCCCAATACAGCTCACTCTTTCAGCACCCTGAGAGACTGTTGCCC
CTGTGAACCCAGCCACACACTTCCATGGGACTCCTGTGGGTTTCAAATATGTGTCTGTGAGAGG
CGTTAAGACCTGGTAGCCAGAAGATACTTCTGAGAATTGTCACCTGTCAAGTCATCGATGATGA
TTGATTGATACACAGGCGTGAGTGTGCTCAAACCCCAGCTGCGGCAGGGTGAAGTCTTCTTGTT
CCATAGATATGGGACTGCTTTTGGGTGTGCCTGGGAGGTGGCATGACACAGCATGTTTACATAC
AGAAACAGGCCTGGCTCTTTTCCGCTGATCACTCTGAAGGTCTGATTGTCCTCTCTTGGATCCC
CTTGAGGAAGAGTAACCCTGTCACACAGCATGTGGCGCTTGTGTGCCCTTAGCTGGATTGTATG
TGATTGAAGAACAAGAACATTGTGTTGCTTTCTTTCCTCGTCCCCACTTAGGGCCAGACCCTCA
TTACCCTCACCTAGCCATCTGCTCCTCTGCAAACAGCTACACACAATGTTTCTCTCGCACAGAC
GACAGCCTTCCATTCTTCCACTATGTGCTGACTGTGCTCAGACTGAGGAGTGGCTCTCCATCTC
CTCGGCTCACTGTAGCTCTTTGTTGCACCCTCTGAAGATGCTCTTTGATGGGTCTGAACAGCAG
CAGCAAAGAGAACTATCCCAATCCTCTGGGTCCCCTGGGAAGGCAAAGAGAACTGTCCTAATCC
TCTGGGTCCCCTGGGAAGGCAGTTAAGACTTTTTTCTGTTACATTAAATGCAGATACTGTTTCT
CCACCTAAGTCCCCAGGTTTGCAGACTGATTGTCATTCTGGCCATTGACAGCTTCCCAGTGCTG
GTAATGGTCTGTTCTCAAAGACCTGAATTAGATGTGAACCCATTCACAGTCCCAGAAGCTCTGT
AGCTACTTTGAAATATGTGGGGTTGCCTGGACCAATGTTGCTATAAATACCAAGTGTTAAAAGC
CCCCTTAAAAAGACAGTAATAAAAAGTACTTTTTTCTTCCAGTTTAACAGAAGAATCTGTCCCT
CGGGGCTCTTGAGGCTCCATTCTGATTACTCCTAACAGGCTATAACCTTCAGTTACCTAGAGCT
TCCCTTTTTATGTTGGGAGAAGTAGCACACAGCTTGTAGTTCCCTGAGACTGGCTGATACAATC
TAACTGGACCGGTTAGGGTTTCAGAATGTGTATCCCTTTGTGGGTTTTGTTGAAGGAGATGTAA
GAACAGATAAGAGTGCGGGCTCTGCTGGCTCAAGCTAGCAAGTGCCCCAGCTGCTTCCTGCCGT
GCAGTAGACAGAAGAAAATGTAACCGGCACTAGTTACAGTTTTGTAAAATTGCCCTTCTAAAGG
TTCTGTTTTCCTTCTCATTGTGTATGCTTGTTGCACAGGGCCCTGTGGTTGGACACTTCCCTGC
AGTTGAGTACTTCCCCCAAGCTCTCCTCTCCCCGTGTTAGGTCCTGCTGTTCCCCTGAACAGTT
TTGCCTTCTACCTTCAGATCGCATACACACCGTGGTTTCATGTCTCTCTACAAAGCTCAGGAGC
TACAAATAAGAGCACACATATGCTGTTTGTCCTCCCTACACCAGCTAACCCCTTAATAGGACCA
TCTCTGGATACATCCATAAAATCACTCTTTATAAAAGTCATTTCTCTTT

hide sequence

RefSeq Acc Id:

NR_184551

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	6	34,132,810 - 34,153,921 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_067410	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH33512	(Get FASTA)	NCBI Sequence Viewer
	BAA95034	(Get FASTA)	NCBI Sequence Viewer
	BAC26707	(Get FASTA)	NCBI Sequence Viewer
	BAC28512	(Get FASTA)	NCBI Sequence Viewer
	BAC29511	(Get FASTA)	NCBI Sequence Viewer
	BAC31186	(Get FASTA)	NCBI Sequence Viewer
	BAE23707	(Get FASTA)	NCBI Sequence Viewer
	BAE37285	(Get FASTA)	NCBI Sequence Viewer
	EDL13698	(Get FASTA)	NCBI Sequence Viewer
	EDL13699	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSMUSP00000019143
	ENSMUSP00000019143.9
	ENSMUSP00000138721.2
GenBank Protein	Q8CIA5	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_067410 ⟸ NM_021435

- UniProtKB:

Q5U681 (UniProtKB/Swiss-Prot), Q3TQU7 (UniProtKB/Swiss-Prot), Q9JJF7 (UniProtKB/Swiss-Prot), Q8CIA5 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MRPAFAVGLVFAGCCSNVIFLELLARTHPGCGNIVTFAQFLFIAVEGFLFEANLGRKPPAIPIR
YYAIMVTMFFTVSVVNNYALNLNIAMPLHMIFRSGSLIANMILGIIILKKRYSMFKYTSIALVS
AGIFICTFMSAKQVTVQTGLSDKDGFQAFAWWLLGIAALTFALLMSARMGIFQETLYRQFGKHS
KEALFYNHALPLPGFIFLASDIYDHVVLFNKSELYQVPVIGVTMPVMWFYLLMNVVTQYVCIRG
VFILTTECTSLTVTLVVTLRKFVSLIFSILYFQNQFTMWHWLGTSFVFIGTLMYTEVWKNLGTT
KSELQKDDKKD

hide sequence

Ensembl Acc Id:

ENSMUSP00000138721 ⟸ ENSMUST00000138250

Ensembl Acc Id:

ENSMUSP00000019143 ⟸ ENSMUST00000019143

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q8CIA5-F1-model_v2	AlphaFold	Q8CIA5	1-331	view protein structure

Promoters

RGD ID:

6839992

Promoter ID:

MM_KWN:45518

Type:

Non-CpG

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

Kidney

Transcripts:

UC009BGW.1

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	6	34,113,091 - 34,113,591 (-)	MPROMDB

RGD ID:

6839991

Promoter ID:

MM_KWN:45519

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day0, 3T3L1_Day1, 3T3L1_Day2, 3T3L1_Day3, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, ES_Cell, Kidney, Liver, Lung, MEF_B4, MEF_B6, Spleen

Transcripts:

OTTMUST00000035056, OTTMUST00000035057, OTTMUST00000035058

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	6	34,126,719 - 34,127,219 (-)	MPROMDB

RGD ID:

6889280

Promoter ID:

EPDNEW_M8091

Type:

initiation region

Name:

Slc35b4_1

Description:

Mus musculus solute carrier family 35, member B4 , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	6	34,176,971 - 34,177,031	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:1931249	AgrOrtholog
Ensembl Genes	ENSMUSG00000018999	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript	ENSMUST00000019143	ENTREZGENE
	ENSMUST00000019143.9	UniProtKB/Swiss-Prot
	ENSMUST00000138250.2	UniProtKB/TrEMBL
InterPro	UAA	UniProtKB/Swiss-Prot
KEGG Report	mmu:58246	UniProtKB/Swiss-Prot
MGD	MGI:1931249	ENTREZGENE
NCBI Gene	58246	ENTREZGENE
PANTHER	PTHR10778	UniProtKB/Swiss-Prot
	UDP-XYLOSE AND UDP-N-ACETYLGLUCOSAMINE TRANSPORTER	UniProtKB/Swiss-Prot
Pfam	UAA	UniProtKB/Swiss-Prot
PhenoGen	Slc35b4	PhenoGen
UniProt	Q3TQU7	ENTREZGENE
	Q5U681	ENTREZGENE
	Q8CB74_MOUSE	UniProtKB/TrEMBL
	Q8CIA5	ENTREZGENE
	Q9JJF7	ENTREZGENE
	S35B4_MOUSE	UniProtKB/Swiss-Prot
	S4R2P0_MOUSE	UniProtKB/TrEMBL
UniProt Secondary	Q3TQU7	UniProtKB/Swiss-Prot
	Q5U681	UniProtKB/Swiss-Prot
	Q9JJF7	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-04-05	Slc35b4	solute carrier family 35, member B4	AW494345	expressed sequence AW494345	Data merged from RGD:1607239	737654	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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