Zdbf2 (zinc finger, DBF-type containing 2) - Rat Genome Database

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Gene: Zdbf2 (zinc finger, DBF-type containing 2) Mus musculus
Analyze
Symbol: Zdbf2
Name: zinc finger, DBF-type containing 2
RGD ID: 1615828
MGI Page MGI
Description: Acts upstream of or within genomic imprinting. Is expressed in several structures, including alimentary system; brain; early conceptus; genitourinary system; and limb segment. Orthologous to human ZDBF2 (zinc finger DBF-type containing 2).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 4930431J08Rik; 9330107J05Rik; DBF4-type zinc finger-containing protein 2 homolog; RP23-434D24.2
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39163,239,517 - 63,353,735 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl163,312,424 - 63,353,735 (+)EnsemblGRCm39 Ensembl
GRCm38163,200,358 - 63,314,576 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl163,273,265 - 63,314,576 (+)EnsemblGRCm38mm10GRCm38
MGSCv37163,319,843 - 63,361,149 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36163,215,142 - 63,244,221 (+)NCBIMGSCv36mm8
Celera163,783,888 - 63,825,567 (+)NCBICelera
Cytogenetic Map1C2NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:12520002   PMID:14610273   PMID:15033168   PMID:16141072  
PMID:16141073   PMID:16602821   PMID:18799693   PMID:19200453   PMID:20385583   PMID:20436462   PMID:21267068   PMID:21873635   PMID:22449967   PMID:23764515   PMID:24589776   PMID:27841881  
PMID:32325033   PMID:33500348   PMID:35049495   PMID:36417873  


Genomics

Comparative Map Data
Zdbf2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39163,239,517 - 63,353,735 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl163,312,424 - 63,353,735 (+)EnsemblGRCm39 Ensembl
GRCm38163,200,358 - 63,314,576 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl163,273,265 - 63,314,576 (+)EnsemblGRCm38mm10GRCm38
MGSCv37163,319,843 - 63,361,149 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36163,215,142 - 63,244,221 (+)NCBIMGSCv36mm8
Celera163,783,888 - 63,825,567 (+)NCBICelera
Cytogenetic Map1C2NCBI
ZDBF2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382206,274,663 - 206,314,427 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2206,274,663 - 206,314,427 (+)EnsemblGRCh38hg38GRCh38
GRCh372207,139,387 - 207,179,151 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362206,847,768 - 206,887,393 (+)NCBINCBI36Build 36hg18NCBI36
Celera2200,901,474 - 200,941,000 (+)NCBICelera
Cytogenetic Map2q33.3NCBI
HuRef2198,989,131 - 199,029,173 (+)NCBIHuRef
CHM1_12207,145,719 - 207,185,344 (+)NCBICHM1_1
T2T-CHM13v2.02206,756,581 - 206,796,353 (+)NCBIT2T-CHM13v2.0
Zdbf2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8972,203,598 - 72,242,287 (+)NCBIGRCr8
mRatBN7.2964,672,974 - 64,748,446 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl964,709,880 - 64,744,265 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0970,052,088 - 70,090,847 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl970,059,683 - 70,089,778 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0969,865,910 - 69,899,981 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4961,956,248 - 61,985,664 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera962,123,980 - 62,162,739 (+)NCBICelera
Cytogenetic Map9q32NCBI
Zdbf2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554578,660,448 - 8,688,116 (-)NCBIChiLan1.0ChiLan1.0
ZDBF2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213108,889,864 - 108,930,512 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B108,905,733 - 108,945,493 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B93,516,875 - 93,556,652 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B211,645,765 - 211,685,056 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B211,645,765 - 211,685,047 (+)Ensemblpanpan1.1panPan2
ZDBF2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13714,867,344 - 14,897,552 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3714,871,575 - 14,894,047 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3715,744,253 - 15,776,223 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03714,803,426 - 14,830,687 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3714,804,153 - 14,831,207 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13714,754,862 - 14,786,824 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03714,728,568 - 14,755,831 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03714,725,690 - 14,757,660 (+)NCBIUU_Cfam_GSD_1.0
Zdbf2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303163,013,306 - 163,051,353 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366312,648,381 - 2,686,434 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366312,649,792 - 2,686,430 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZDBF2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15109,578,473 - 109,589,813 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115109,563,445 - 109,593,858 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215121,111,507 - 121,138,902 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZDBF2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11092,053,136 - 92,092,270 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1092,060,623 - 92,092,258 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040107,283,075 - 107,321,306 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zdbf2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247659,806,231 - 9,837,454 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Zdbf2
4680 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2086
Count of miRNA genes:588
Interacting mature miRNAs:717
Transcripts:ENSMUST00000029025, ENSMUST00000114132, ENSMUST00000126932
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
1357524W6q14_mweight 6 weeks QTL 14 (mouse)Not determined13476013873976915Mouse
12910788Pwgrq9_mpost-weaning growth rate QTL 9 (mouse)14086800867270256Mouse
1301714Vertcling_mvertical clinging (mouse)Not determined14293803176938167Mouse
18182931Metl1_mmetabolite locus 1, pyridoxate (mouse)14127539975275399Mouse
4141305Tgq9_mtriglyceride QTL 9 (mouse)Not determined5142160585421605Mouse
1357651Lgq5_mlate growth QTL 5 (mouse)Not determined13476013873976915Mouse
12910786Pwgrq10_mpost-weaning growth rate QTL 10 (mouse)14086800867270256Mouse
1301211Bbaa11_mB.burgdorferi-associated arthritis 11 (mouse)Not determined14888900682889210Mouse
1301722Cia9_mcollagen induced arthritis QTL 9 (mouse)Not determined145783900189303617Mouse
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
1357721Sle17_msystematic lupus erythematosus susceptibility 17 (mouse)Not determined139132808126445310Mouse
1558855Eae30_mexperimental allergic encephalomyelitis susceptibility 30 (mouse)Not determined14541777372975057Mouse
1301954Lrnx11_mlearning-contextual 11 (mouse)Not determined13913280874516365Mouse
1357824Estoq4_membryo survival total QTL 4 (mouse)Not determined13476013873976915Mouse
1357505Vtbt1_mvertebral trabecular bone trait 1 (mouse)Not determined15626621490266360Mouse
1357506W10q6_mweight 10 weeks QTL 6 (mouse)Not determined13476013873976915Mouse
4141032Wbcc1_mwhite blood cell count 1 (mouse)Not determined4225966776259667Mouse
14746998Mancz1_mmandible centroid size 1 (mouse)15794135191941351Mouse
1301444Alcw5_malcohol withdrawal 5 (mouse)Not determined15854919192549443Mouse
1300746Skl1_mskeletal size (tail length) 1 (mouse)Not determined15799197791992080Mouse
39128207Lwq16_mliver weight QTL 16 (mouse)13476013873976915Mouse
1558860W10q7_mweight 10 weeks QTL 7 (mouse)Not determined134760138150193871Mouse
4142307Shali1_msurvival time to hyperoxic acute lung injury 1 (mouse)Not determined5196402570406589Mouse
14747009Manh49_mmandible shape 49 (mouse)15794135191941351Mouse
1301616Yaa2_mY-linked autoimmune acceleration 2 (mouse)Not determined14685469080854839Mouse
1357488Splq3_mspleen weight QTL 3 (mouse)Not determined134760138150193871Mouse
10043965Obq24_mobesity QTL 24 (mouse)Not determined15089021684890216Mouse
1301430Cdcs2_mcytokine deficiency colitis susceptibility 2 (mouse)Not determined14889234582892485Mouse
1301748Abbp1_mA/J and C57BL/6 blood pressure 1 (mouse)Not determined162946755120529678Mouse
1558717Ses1a_msalmonella enteritidis susceptibility 1a (mouse)Not determined15672692290727077Mouse
1357759W3q12_mweight 3 weeks QTL 12 (mouse)Not determined13476013873976915Mouse
4142291Aec2_mautoimmune exocrinopathy 2 (mouse)Not determined52457737182250592Mouse
1357753Kidq2_mkidney weight QTL 2 (mouse)Not determined134760138150193871Mouse
1558905Gct7_mgranulosa cell tumorigenesis 7 (mouse)Not determined14734989481350013Mouse
1301667Lxw5_mlupus BXSB x NZW 5 (mouse)Not determined15854919192549443Mouse
1558822Vas1_mautoimmune vasitis resistance 1 (mouse)Not determined14888900682889210Mouse
1301670Ssta1_msusceptibility to Salmonella typhimurium antigens 1 (mouse)Not determined14594675579946882Mouse
1357475w3q13_mweight 3 weeks QTL 13 (mouse)Not determined12310959173976915Mouse
12910780Pwgrq11_mpost-weaning growth rate QTL 11 (mouse)14086800867270256Mouse
1357741Nidd5k_mNidd5 on KK-A<y> (mouse)Not determined15597494889975057Mouse
1301162Skull1_mskull morphology 1 (mouse)Not determined15799197791992080Mouse
1301225Sle7_msystematic lupus erythematosus susceptibility 7 (mouse)Not determined14685469080854839Mouse
1357679Egrm1_mearly growth rate, maternal effect 1 (mouse)Not determined15799197791992080Mouse
4142467Wbcq1_mwhite blood cell quantitative locus 1 (mouse)Not determined15626621490266360Mouse
1301166Thypr2_mthymocyte proliferative response 2 (mouse)Not determined14127312475273271Mouse
1301933Insq6_minsulin QTL 6 (mouse)Not determined15672692290727077Mouse

Markers in Region
AW554859  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38163,314,188 - 63,314,321UniSTSGRCm38
MGSCv37163,360,762 - 63,360,895UniSTSGRCm37
Celera163,825,180 - 63,825,313UniSTS
Cytogenetic Map1C2UniSTS
Whitehead/MRC_RH1885.62UniSTS
AW045603  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38163,314,302 - 63,314,384UniSTSGRCm38
MGSCv37163,360,876 - 63,360,958UniSTSGRCm37
Celera163,825,294 - 63,825,376UniSTS
Cytogenetic Map1C2UniSTS
Whitehead/MRC_RH1885.38UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001267872 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001285936 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001285937 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_028673 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011238606 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011238607 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030243194 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030243195 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030243196 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030243197 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036153849 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036153851 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036153852 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB777269 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB777270 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK015271 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK033878 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK047625 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK132808 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL645950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL669947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC050985 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000029025   ⟹   ENSMUSP00000029025
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl163,329,897 - 63,353,734 (+)Ensembl
GRCm38.p6 Ensembl163,290,738 - 63,314,575 (+)Ensembl
Ensembl Acc Id: ENSMUST00000114132   ⟹   ENSMUSP00000109767
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl163,312,424 - 63,353,735 (+)Ensembl
GRCm38.p6 Ensembl163,273,265 - 63,314,576 (+)Ensembl
Ensembl Acc Id: ENSMUST00000126932   ⟹   ENSMUSP00000116403
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl163,312,428 - 63,334,181 (+)Ensembl
GRCm38.p6 Ensembl163,273,269 - 63,295,022 (+)Ensembl
Ensembl Acc Id: ENSMUST00000239483   ⟹   ENSMUSP00000159296
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl163,312,424 - 63,353,735 (+)Ensembl
GRCm38.p6 Ensembl163,273,265 - 63,314,576 (+)Ensembl
RefSeq Acc Id: NM_001267872   ⟹   NP_001254801
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39163,312,428 - 63,353,734 (+)NCBI
GRCm38163,273,269 - 63,314,575 (+)NCBI
Celera163,710,731 - 63,825,567 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001285936   ⟹   NP_001272865
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39163,239,517 - 63,353,734 (+)NCBI
GRCm38163,200,358 - 63,314,575 (+)NCBI
Celera163,710,731 - 63,825,567 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001285937   ⟹   NP_001272866
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39163,239,517 - 63,353,734 (+)NCBI
GRCm38163,200,358 - 63,314,575 (+)NCBI
Celera163,710,731 - 63,825,567 (+)NCBI
Sequence:
RefSeq Acc Id: NM_028673   ⟹   NP_082949
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39163,312,428 - 63,353,734 (+)NCBI
GRCm38163,273,269 - 63,314,575 (+)NCBI
MGSCv37163,319,843 - 63,361,149 (+)RGD
Celera163,710,731 - 63,825,567 (+)NCBI
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_011238606   ⟹   XP_011236908
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39163,312,543 - 63,353,735 (+)NCBI
GRCm38163,273,384 - 63,314,576 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011238607   ⟹   XP_011236909
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39163,312,337 - 63,353,735 (+)NCBI
GRCm38163,273,174 - 63,314,576 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030243194   ⟹   XP_030099054
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39163,312,543 - 63,353,735 (+)NCBI
GRCm38163,273,384 - 63,314,576 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030243195   ⟹   XP_030099055
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39163,312,427 - 63,353,735 (+)NCBI
GRCm38163,273,268 - 63,314,576 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030243196   ⟹   XP_030099056
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39163,312,646 - 63,353,735 (+)NCBI
GRCm38163,273,487 - 63,314,576 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030243197   ⟹   XP_030099057
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39163,312,542 - 63,353,735 (+)NCBI
GRCm38163,273,383 - 63,314,576 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036153849   ⟹   XP_036009742
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39163,312,655 - 63,353,735 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036153851   ⟹   XP_036009744
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39163,312,542 - 63,353,735 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036153852   ⟹   XP_036009745
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39163,312,687 - 63,353,735 (+)NCBI
Sequence:
RefSeq Acc Id: NP_082949   ⟸   NM_028673
- Peptide Label: isoform 1
- UniProtKB: Q3V0Y4 (UniProtKB/Swiss-Prot),   Q9CUN4 (UniProtKB/Swiss-Prot),   Q5SS00 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001254801   ⟸   NM_001267872
- Peptide Label: isoform 1
- UniProtKB: Q3V0Y4 (UniProtKB/Swiss-Prot),   Q9CUN4 (UniProtKB/Swiss-Prot),   Q5SS00 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001272865   ⟸   NM_001285936
- Peptide Label: isoform 2
- UniProtKB: A0A6I8MWW6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001272866   ⟸   NM_001285937
- Peptide Label: isoform 2
- UniProtKB: A0A6I8MWW6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011236908   ⟸   XM_011238606
- Peptide Label: isoform X1
- UniProtKB: A0A6I8MWW6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011236909   ⟸   XM_011238607
- Peptide Label: isoform X1
- UniProtKB: A0A6I8MWW6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030099055   ⟸   XM_030243195
- Peptide Label: isoform X2
- UniProtKB: Q5SS00 (UniProtKB/Swiss-Prot),   Q3V0Y4 (UniProtKB/Swiss-Prot),   Q9CUN4 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_030099057   ⟸   XM_030243197
- Peptide Label: isoform X3
RefSeq Acc Id: XP_030099054   ⟸   XM_030243194
- Peptide Label: isoform X2
- UniProtKB: Q5SS00 (UniProtKB/Swiss-Prot),   Q3V0Y4 (UniProtKB/Swiss-Prot),   Q9CUN4 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_030099056   ⟸   XM_030243196
- Peptide Label: isoform X2
- UniProtKB: Q5SS00 (UniProtKB/Swiss-Prot),   Q3V0Y4 (UniProtKB/Swiss-Prot),   Q9CUN4 (UniProtKB/Swiss-Prot)
Ensembl Acc Id: ENSMUSP00000159296   ⟸   ENSMUST00000239483
Ensembl Acc Id: ENSMUSP00000029025   ⟸   ENSMUST00000029025
Ensembl Acc Id: ENSMUSP00000116403   ⟸   ENSMUST00000126932
Ensembl Acc Id: ENSMUSP00000109767   ⟸   ENSMUST00000114132
RefSeq Acc Id: XP_036009744   ⟸   XM_036153851
- Peptide Label: isoform X2
- UniProtKB: Q5SS00 (UniProtKB/Swiss-Prot),   Q3V0Y4 (UniProtKB/Swiss-Prot),   Q9CUN4 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_036009742   ⟸   XM_036153849
- Peptide Label: isoform X1
- UniProtKB: A0A6I8MWW6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036009745   ⟸   XM_036153852
- Peptide Label: isoform X2
- UniProtKB: Q5SS00 (UniProtKB/Swiss-Prot),   Q3V0Y4 (UniProtKB/Swiss-Prot),   Q9CUN4 (UniProtKB/Swiss-Prot)
Protein Domains
DBF4-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5SS00-F1-model_v2 AlphaFold Q5SS00 1-2493 view protein structure

Promoters
RGD ID:6873916
Promoter ID:EPDNEW_M409
Type:single initiation site
Name:Zdbf2_2
Description:Mus musculus zinc finger, DBF-type containing 2 , transcriptvariant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M411  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38163,211,607 - 63,211,667EPDNEW
RGD ID:6873920
Promoter ID:EPDNEW_M411
Type:initiation region
Name:Zdbf2_1
Description:Mus musculus zinc finger, DBF-type containing 2 , transcriptvariant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M409  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38163,273,194 - 63,273,254EPDNEW
RGD ID:6818745
Promoter ID:MM_KWN:959
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:ES_Cell
Transcripts:ENSMUST00000029025,   ENSMUST00000114132,   NM_028673,   OTTMUST00000005180,   OTTMUST00000005181,   OTTMUST00000018784
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36163,319,711 - 63,320,211 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1921134 AgrOrtholog
Ensembl Genes ENSMUSG00000027520 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000029025 ENTREZGENE
  ENSMUST00000029025.9 UniProtKB/Swiss-Prot
  ENSMUST00000114132 ENTREZGENE
  ENSMUST00000114132.8 UniProtKB/Swiss-Prot
  ENSMUST00000126932.2 UniProtKB/TrEMBL
  ENSMUST00000239483 ENTREZGENE
  ENSMUST00000239483.2 UniProtKB/TrEMBL
Gene3D-CATH 6.10.250.3410 UniProtKB/TrEMBL
  Insect antifreeze protein UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro ZDBF2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_DBF UniProtKB/TrEMBL
  Znf_DBF_sf UniProtKB/TrEMBL
KEGG Report mmu:73884 UniProtKB/Swiss-Prot
MGD MGI:1921134 ENTREZGENE
NCBI Gene 73884 ENTREZGENE
PANTHER DBF4-TYPE ZINC FINGER-CONTAINING PROTEIN 2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR21639 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam zf-DBF UniProtKB/TrEMBL
PhenoGen Zdbf2 PhenoGen
PROSITE ZF_DBF4 UniProtKB/TrEMBL
SMART ZnF_DBF UniProtKB/TrEMBL
UniProt A0A6I8MWW6 ENTREZGENE, UniProtKB/TrEMBL
  B1AU71_MOUSE UniProtKB/TrEMBL
  Q3V0Y4 ENTREZGENE
  Q5SS00 ENTREZGENE
  Q9CUN4 ENTREZGENE
  ZDBF2_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q3V0Y4 UniProtKB/Swiss-Prot
  Q9CUN4 UniProtKB/Swiss-Prot