Gm4987 (predicted gene 4987) - Rat Genome Database

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Gene: Gm4987 (predicted gene 4987) Mus musculus
Analyze
Symbol: Gm4987
Name: predicted gene 4987
RGD ID: 1615631
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: EG245405; hypothetical protein LOC245405; novel protein silmilar to ribosomal protein L32
Related Functional Gene: Rpl32  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X45,544,719 - 45,545,222 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX45,544,764 - 45,545,171 (-)EnsemblGRCm39 Ensembl
GRCm38X46,455,842 - 46,456,345 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX46,455,887 - 46,456,294 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X43,809,018 - 43,809,523 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X42,700,461 - 42,700,974 (-)NCBIMGSCv36mm8
CeleraX33,982,713 - 33,983,218 (-)NCBICelera
Cytogenetic MapXA4NCBI
cM MapX24.59NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Gm4987
4 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:25
Count of miRNA genes:25
Interacting mature miRNAs:25
Transcripts:ENSMUST00000078326
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357433Dbts2_mdiabetes 2 (mouse)Not determinedX7226295150107038Mouse
13208553Wght11_mweight 11 (mouse)X1186623959045360Mouse
13208557Lgth13_mbody length 13 (mouse)X1186623959045360Mouse
1558721Bw1_mbody weight QTL 1 (mouse)Not determinedX2060678347179225Mouse
27226750Femd9_mfemur midshaft diameter 9, 10 week (mouse)X3333746355845360Mouse
27226780Femd12_mfemur midshaft diameter 12, 16 week (mouse)X3466365356845360Mouse
13208567Bmiq12_mbody mass index QTL 12 (mouse)X3526365377043606Mouse
1301009Pbwg7_mpostnatal body weight growth 7 (mouse)Not determinedX3911371473113814Mouse
4141565Pbwg21_mpostnatal body weight growth 21 (mouse)Not determinedX3911371473113814Mouse
1300794Spha2_msperm head anomaly 2 (mouse)Not determinedX3992149886260137Mouse
4142200Rtwq1_mreduced testis weight QTL 1 (mouse)Not determined4147706075477203Mouse
1301278Bdln1_mbody length 1 (mouse)Not determinedX4170210675702218Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000078326
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX45,544,764 - 45,545,171 (-)Ensembl
GRCm38.p6 EnsemblX46,455,887 - 46,456,294 (-)Ensembl
RefSeq Acc Id: NM_001085510
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv37X43,809,018 - 43,809,523 (-)RGD
CeleraX33,982,713 - 33,983,218 (-)RGD
Protein Sequences
GenBank Protein EDL29051 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences

Promoters
RGD ID:6845769
Promoter ID:MM_KWN:60184
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:ES_Cell
Transcripts:NM_001085510
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36X43,809,396 - 43,809,896 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000063816 Ensembl, ENTREZGENE
MGD MGI:3647751 ENTREZGENE
NCBI Gene 245405 ENTREZGENE
PhenoGen Gm4987 PhenoGen